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IDProjectCategoryView StatusDate SubmittedLast Update
0004125OpenFOAMBugpublic2024-08-02 17:352024-08-14 09:37
Reportercarlos-encs Assigned Towyldckat  
PriorityhighSeverityblockReproducibilityalways
Status closedResolutionno change required 
Platformx86_64OSAlmaLinux OS Version9.4
Product Version12 
Summary0004125: Can't compile OpenFOAM-12 - touch: cannot touch - error
DescriptionHi

Thirty-Party compiled
Paraview compiled
OpenFOAM-12 can't complete the compilation, it shows this error:

touch: cannot touch '/encs/pkg/OpenFOAM-12.0/root/OpenFOAM-12/platforms/linux64GccDPInt32OptOPENMPI/src/Pstream/mpi/using:openmpi-2.1.1': No such file or directory

Shell: Tcsh
Steps To Reproducesource $FOAM_INST_DIR/OpenFOAM-12/etc/cshrc
./Allwmake -j

Compiling enabled on 2 cores
Allwmake /encs/pkg/OpenFOAM-12.0/root/OpenFOAM-12
make: Nothing to be done for 'all'.

========================================
Start ThirdParty Allwmake
========================================

========================================
Build MPI libraries if required
    have OPENMPI shared library (openmpi-2.1.1)

========================================
ThirdParty installation of Scotch decomposition found
    scotch header in /encs/pkg/OpenFOAM-12.0/root/ThirdParty-12/platforms/linux64GccDPInt32/scotch_6.0.9/include
    scotch libs in /encs/pkg/OpenFOAM-12.0/root/ThirdParty-12/platforms/linux64GccDPInt32/lib

========================================
ThirdParty installation of PT-Scotch decomposition found
    ptscotch header in /encs/pkg/OpenFOAM-12.0/root/ThirdParty-12/platforms/linux64GccDPInt32/scotch_6.0.9/include/openmpi-2.1.1
    ptscotch libs in /encs/pkg/OpenFOAM-12.0/root/ThirdParty-12/platforms/linux64GccDPInt32/lib/openmpi-2.1.1

========================================
METIS decomposition is disabled

========================================
ParMETIS decomposition is disabled

========================================
ThirdParty installation of Zoltan decomposition found
    Zoltan header in /encs/pkg/OpenFOAM-12.0/root/ThirdParty-12/platforms/linux64GccDPInt32/Zoltan-3.90/include
    Zoltan libs in /encs/pkg/OpenFOAM-12.0/root/ThirdParty-12/platforms/linux64GccDPInt32/lib/openmpi-2.1.1

========================================
Done ThirdParty Allwmake
========================================

Allwmake src
no git description found
Allwmake src/Pstream
wmake dummy
wclean mpi
wmake mpi
wmakeLnInclude: linking include files to ./lnInclude
Making dependency list for source file PstreamGlobals.C
Making dependency list for source file UPstream.C
Making dependency list for source file UIPread.C
Making dependency list for source file UOPwrite.C
g++ -std=c++14 -m64 -DLIB_NAME=libPstream.so -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wold-style-cast -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -Wno-attributes -O3 -DNoRepository -ftemplate-depth-100 -DOMPI_SKIP_MPICXX -isystem /encs/pkg/OpenFOAM-12.0/root/ThirdParty-12/platforms/linux64Gcc/openmpi-2.1.1/include -IlnInclude -I. -I/encs/pkg/OpenFOAM-12.0/root/OpenFOAM-12/src/OpenFOAM/lnInclude -I/encs/pkg/OpenFOAM-12.0/root/OpenFOAM-12/src/OSspecific/POSIX/lnInclude -fPIC -c UOPwrite.C -o Make/linux64GccDPInt32OptOPENMPI/UOPwrite.o
g++ -std=c++14 -m64 -DLIB_NAME=libPstream.so -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wold-style-cast -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -Wno-attributes -O3 -DNoRepository -ftemplate-depth-100 -DOMPI_SKIP_MPICXX -isystem /encs/pkg/OpenFOAM-12.0/root/ThirdParty-12/platforms/linux64Gcc/openmpi-2.1.1/include -IlnInclude -I. -I/encs/pkg/OpenFOAM-12.0/root/OpenFOAM-12/src/OpenFOAM/lnInclude -I/encs/pkg/OpenFOAM-12.0/root/OpenFOAM-12/src/OSspecific/POSIX/lnInclude -fPIC -c UIPread.C -o Make/linux64GccDPInt32OptOPENMPI/UIPread.o
g++ -std=c++14 -m64 -DLIB_NAME=libPstream.so -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wold-style-cast -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -Wno-attributes -O3 -DNoRepository -ftemplate-depth-100 -DOMPI_SKIP_MPICXX -isystem /encs/pkg/OpenFOAM-12.0/root/ThirdParty-12/platforms/linux64Gcc/openmpi-2.1.1/include -IlnInclude -I. -I/encs/pkg/OpenFOAM-12.0/root/OpenFOAM-12/src/OpenFOAM/lnInclude -I/encs/pkg/OpenFOAM-12.0/root/OpenFOAM-12/src/OSspecific/POSIX/lnInclude -fPIC -c UPstream.C -o Make/linux64GccDPInt32OptOPENMPI/UPstream.o
g++ -std=c++14 -m64 -DLIB_NAME=libPstream.so -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wold-style-cast -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -Wno-attributes -O3 -DNoRepository -ftemplate-depth-100 -DOMPI_SKIP_MPICXX -isystem /encs/pkg/OpenFOAM-12.0/root/ThirdParty-12/platforms/linux64Gcc/openmpi-2.1.1/include -IlnInclude -I. -I/encs/pkg/OpenFOAM-12.0/root/OpenFOAM-12/src/OpenFOAM/lnInclude -I/encs/pkg/OpenFOAM-12.0/root/OpenFOAM-12/src/OSspecific/POSIX/lnInclude -fPIC -c PstreamGlobals.C -o Make/linux64GccDPInt32OptOPENMPI/PstreamGlobals.o
g++ -std=c++14 -m64 -DLIB_NAME=libPstream.so -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wold-style-cast -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -Wno-attributes -O3 -DNoRepository -ftemplate-depth-100 -DOMPI_SKIP_MPICXX -isystem /encs/pkg/OpenFOAM-12.0/root/ThirdParty-12/platforms/linux64Gcc/openmpi-2.1.1/include -IlnInclude -I. -I/encs/pkg/OpenFOAM-12.0/root/OpenFOAM-12/src/OpenFOAM/lnInclude -I/encs/pkg/OpenFOAM-12.0/root/OpenFOAM-12/src/OSspecific/POSIX/lnInclude -fPIC -fuse-ld=bfd -shared -Xlinker --add-needed -Xlinker --no-as-needed Make/linux64GccDPInt32OptOPENMPI/UOPwrite.o Make/linux64GccDPInt32OptOPENMPI/UIPread.o Make/linux64GccDPInt32OptOPENMPI/UPstream.o Make/linux64GccDPInt32OptOPENMPI/PstreamGlobals.o -L/encs/pkg/OpenFOAM-12.0/root/OpenFOAM-12/platforms/linux64GccDPInt32OptOPENMPI/lib \
    -L/encs/pkg/OpenFOAM-12.0/root/ThirdParty-12/platforms/linux64Gcc/openmpi-2.1.1/lib64 -L/encs/pkg/OpenFOAM-12.0/root/ThirdParty-12/platforms/linux64Gcc/openmpi-2.1.1/lib -lmpi -o /encs/pkg/OpenFOAM-12.0/root/OpenFOAM-12/platforms/linux64GccDPInt32Opt/lib/openmpi-2.1.1/libPstream.so
touch: cannot touch '/encs/pkg/OpenFOAM-12.0/root/OpenFOAM-12/platforms/linux64GccDPInt32OptOPENMPI/src/Pstream/mpi/using:openmpi-2.1.1': No such file or directory
Additional InformationSource files used:
OpenFOAM-12-version-12.tar.gz
ThirdParty-12-version-12.tar.gz
mv OpenFOAM-12-version-12 OpenFOAM-12
mv ThirdParty-12-version-12 ThirdParty-12
cd ThirdParty-12
openmpi-2.1.1.tar.bz2 | tar -xvpf -

setenv FOAM_INST_DIR /encs/pkg/OpenFOAM-12.0/root

changes in cshrc: $FOAM_INST_DIR/OpenFOAM-12/etc/cshrc

setenv WM_MPLIB OPENMPI
setenv WM_OSTYPE POSIX
TagsNo tags attached.

Relationships

related to 0004137 new Proposal for improving the build workflow for parallel libraries 

Activities

wyldckat

2024-08-12 16:37

updater   ~0013363

Something went wrong in the environment settings... because the linking command before the error, lists the following:

    Make/linux64GccDPInt32OptOPENMPI/UOPwrite.o Make/linux64GccDPInt32OptOPENMPI/UIPread.o Make/linux64GccDPInt32OptOPENMPI/UPstream.o Make/linux64GccDPInt32OptOPENMPI/PstreamGlobals.o

It should include the full path to '/encs/pkg/OpenFOAM-12.0/root/OpenFOAM-12/platforms/linux64GccDPInt32OptOPENMPI/src/Pstream/mpi/' for each file, not the relative path.

My guess is that the environment variable 'FOAM_INST_DIR' is pointing to a symbolic link path, instead of the real path at '/encs/pkg/OpenFOAM-12.0/root/'.
Furthermore, said path should be consistent with the environment variable 'WM_PROJECT_DIR'.

wyldckat

2024-08-12 16:40

updater   ~0013364

The original file 'OpenFOAM-12/etc/cshrc' will reset the variable 'FOAM_INST_DIR'... unless you've edited said file and modified it.

carlos-encs

2024-08-13 22:21

reporter   ~0013374

@wyldckat

Thank you for your answer.

Using absolute paths solved the issue.

Thanks

Regards

wyldckat

2024-08-14 09:35

updater   ~0013375

@carlos-encs: Thanks for the feedback! I'm glad that solved the issue.

Issue History

Date Modified Username Field Change
2024-08-02 17:35 carlos-encs New Issue
2024-08-12 16:37 wyldckat Note Added: 0013363
2024-08-12 16:40 wyldckat Note Added: 0013364
2024-08-13 11:48 wyldckat Relationship added related to 0004137
2024-08-13 22:21 carlos-encs Note Added: 0013374
2024-08-14 09:35 wyldckat Note Added: 0013375
2024-08-14 09:37 wyldckat Assigned To => wyldckat
2024-08-14 09:37 wyldckat Status new => closed
2024-08-14 09:37 wyldckat Resolution open => no change required