View Issue Details
ID | Project | Category | View Status | Date Submitted | Last Update |
---|---|---|---|---|---|
0004062 | OpenFOAM | Bug | public | 2024-03-06 16:20 | 2024-06-18 07:49 |
Reporter | Ulrich | Assigned To | chris | ||
Priority | normal | Severity | minor | Reproducibility | always |
Status | closed | Resolution | fixed | ||
Platform | Macintosh | OS | macOS Sonoma | OS Version | 14.2.1 |
Product Version | 10 | ||||
Summary | 0004062: openfoam10-macos needs modification to run | ||||
Description | Lines 92, 143, 144 and 202 need to be modified to run openfoam 10 on my system. Please see attached files. The same applies for openfoam 11. The files system of my computer is not case sensitive. I created a case sensitive openfoam folder. | ||||
Tags | No tags attached. | ||||
related to | 0004092 | resolved | chris | Can not specify volume size with "openfoam-macos-file-system" script |
related to | 0004091 | closed | chris | openfoam11-macos script throws error: "docker: invalid reference format.". |
related to | 0004090 | closed | chris | openfoam11-macos throws error: "No directory exists:". |
related to | 0004065 | closed | chris | Followed the installation but something is missing |
|
openfoam10-macos_modified (6,846 bytes)
#!/bin/sh #------------------------------------------------------------------------------ # ========= | # \\ / F ield | OpenFOAM: The Open Source CFD Toolbox # \\ / O peration | # \\ / A nd | Copyright (C) 2017-2023 OpenFOAM Foundation # \\/ M anipulation | #------------------------------------------------------------------------------- # License # This program is free software: you can redistribute it and/or modify it # under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, but # WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY # or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License # for more details. # # You should have received a copy of the GNU General Public License # along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>. # # Script # openfoam10-macos # # Description # Run script for an OpenFOAM 10 Docker image at: # https://hub.docker.com/r/openfoam # #------------------------------------------------------------------------------ Script=${0##*/} ver=10 usage () { exec 1>&2 while [ "$#" -ge 1 ]; do echo "$1"; shift; done cat <<USAGE Usage: ${0##*/} [OPTIONS] options: -d | -dir host directory mounted (defaults to current directory) -h | -help help -p | -paraview [vers] include paraview, with version 56 | 510 (default) -u | -upgrade install latest upgrades to the Docker image -x | -xhost use custom X authority and give container host network Launches the OpenFOAM-$ver Docker image. - Requires installation of docker-engine. - Runs a "containerized" bash shell environment where the user can run OpenFOAM and, optionally, ParaView (see below). - The container mounts the user's file system so that case files are stored permanently. The container mounts the current directory by default, but the user can also specify a particular directory using the "-d" option. - Mounting the user's HOME directory is disallowed. - The '-xhost' option is useful when accessing the host via 'ssh -X'. This option should only be used when strictly necessary, as it relies on the option '--net=host' when launching the container in Docker, which will give to the container full access to the Docker host network stack and potentially the host's system services that rely on network communication, making it potentially insecure. ParaView: Graphical applications from the Docker container require installation of the Xquartz X server to display on the host machine. While applications such as Gedit, Emacs and GnuPlot will run effectively using Xquartz, more intensive OpenGL applications, in particular ParaView, can be prohibitively slow. Therefore, the default Docker image does not contain ParaView and users can instead install ParaView directly from the vendor and use the built-in reader module for OpenFOAM: https://www.paraview.org/download However, if the user wishes to include ParaView with the official OpenFOAM reader module in their Docker container, they can do so with the "-p" option. Example: To store data in $HOME/OpenFOAM/$USER-$ver, the user can launch $Script either by: cd $HOME/OpenFOAM/$USER-$ver && $Script or $Script -d $HOME/OpenFOAM/$USER-$ver Further Information: https://openfoam.org/download/$ver-macos Note: The container user name appears as "openfoam" but it is just an alias. USAGE exit 1 } docker_image="openfoam/openfoam$ver-graphical-apps" paraview_vers="" mount_dir=$(pwd) custom_xauth="" docker_options="" while [ "$#" -gt 0 ] do case "$1" in -d | -dir) [ "$#" -ge 2 ] || usage "'$1' option requires an argument" mount_dir=$2 shift 2 ;; -h | -help) usage ;; -p | -paraview) # No version specified { [ "$#" -eq 1 ] || [ "$(echo "$2" | cut -c1)" = "-" ] ; } && \ paraview_vers=510 && \ shift 1 && \ continue # Version specified paraview_vers=$2 case "$paraview_vers" in 56|510) ;; *) usage "'$2' is not a valid ParaView version." \ "Valid versions are 56 | 510." ;; esac shift 2 ;; -u | -upgrade) upgrade=yes shift ;; -x | -xhost) custom_xauth=yes shift ;; *) usage "Invalid option '$1'" ;; esac done [ "$paraview_vers" ] && \ echo "Including ParaView $paraview_vers" && \ docker_image="openfoam/openfoam$ver-paraview$paraview_vers" #[ -d "$MOUNT_DIR" ] || usage "No directory exists: $MOUNT_DIR" #MOUNT_DIR=$(cd "$MOUNT_DIR" && pwd -P) [ -d "$mount_dir" ] || usage "No directory exists: $mount_dir" mount_dir=$(cd "$mount_dir" && pwd -P) [ "$mount_dir" = "$(cd "$HOME" && pwd -P)" ] && \ usage "Mount directory cannot be the user's home directory" \ "Make a subdirectory and run from there, e.g." \ " mkdir -p $HOME/OpenFOAM/$(whoami)-$ver" \ " $Script -d $HOME/OpenFOAM/$(whoami)-$ver" if [ -n "$custom_xauth" ] then xauth_path="$mount_dir/.docker.xauth.$$" touch "$xauth_path" # Generate a custom X-authority file that allows any hostname xauth nlist "$DISPLAY" | sed -e 's/^..../ffff/' | \ xauth -f "$xauth_path" nmerge - docker_options="-e XAUTHORITY=$xauth_path -v $xauth_path:$xauth_path --net=host" fi user_id=$(id -u 2> /dev/null) [ -n "$user_id" ] || usage "Cannot determine current user ID" group_id=$(id -g) home_dir='/home/openfoam' echo "Launching $0" echo "User: \"$(id -un)\" (ID $user_id, group ID $group_id)" ifaces=$(ifconfig | grep ^en | cut -d: -f1) [ "$ifaces" ] || \ usage "Cannot find a network interface for DISPLAY with ifconfig" \ "Please report an issue at http://bugs.openfoam.org" \ " providing the output of the command: ifconfig" for i in $ifaces do ip=$(ifconfig "$i" | grep inet | awk '$1=="inet" {print $2}') [ "$ip" ] && break done [ "$ip" ] || \ usage "Cannot find a network IP for DISPLAY with ifconfig" \ "Please report an issue at https://bugs.openfoam.org" \ " providing the output of the command: ifconfig" xhost + "$ip" [ "$upgrade" ] && docker pull "$docker_image" # shellcheck disable=SC2086 docker run -it \ --rm \ -e DISPLAY=$ip:0 \ -u "$user_id":"$group_id" \ -v /tmp/.X11-unix:/tmp/.X11-unix \ -v "$mount_dir":$home_dir \ $docker_options \ "$docker_image" [ -n "$custom_xauth" ] && [ -e "$xauth_path" ] && rm "$xauth_path" openfoam10-macos_original (6,844 bytes)
#!/bin/sh #------------------------------------------------------------------------------ # ========= | # \\ / F ield | OpenFOAM: The Open Source CFD Toolbox # \\ / O peration | # \\ / A nd | Copyright (C) 2017-2023 OpenFOAM Foundation # \\/ M anipulation | #------------------------------------------------------------------------------- # License # This program is free software: you can redistribute it and/or modify it # under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, but # WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY # or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License # for more details. # # You should have received a copy of the GNU General Public License # along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>. # # Script # openfoam10-macos # # Description # Run script for an OpenFOAM 10 Docker image at: # https://hub.docker.com/r/openfoam # #------------------------------------------------------------------------------ Script=${0##*/} ver=10 usage () { exec 1>&2 while [ "$#" -ge 1 ]; do echo "$1"; shift; done cat <<USAGE Usage: ${0##*/} [OPTIONS] options: -d | -dir host directory mounted (defaults to current directory) -h | -help help -p | -paraview [vers] include paraview, with version 56 | 510 (default) -u | -upgrade install latest upgrades to the Docker image -x | -xhost use custom X authority and give container host network Launches the OpenFOAM-$ver Docker image. - Requires installation of docker-engine. - Runs a "containerized" bash shell environment where the user can run OpenFOAM and, optionally, ParaView (see below). - The container mounts the user's file system so that case files are stored permanently. The container mounts the current directory by default, but the user can also specify a particular directory using the "-d" option. - Mounting the user's HOME directory is disallowed. - The '-xhost' option is useful when accessing the host via 'ssh -X'. This option should only be used when strictly necessary, as it relies on the option '--net=host' when launching the container in Docker, which will give to the container full access to the Docker host network stack and potentially the host's system services that rely on network communication, making it potentially insecure. ParaView: Graphical applications from the Docker container require installation of the Xquartz X server to display on the host machine. While applications such as Gedit, Emacs and GnuPlot will run effectively using Xquartz, more intensive OpenGL applications, in particular ParaView, can be prohibitively slow. Therefore, the default Docker image does not contain ParaView and users can instead install ParaView directly from the vendor and use the built-in reader module for OpenFOAM: https://www.paraview.org/download However, if the user wishes to include ParaView with the official OpenFOAM reader module in their Docker container, they can do so with the "-p" option. Example: To store data in $HOME/OpenFOAM/$USER-$ver, the user can launch $Script either by: cd $HOME/OpenFOAM/$USER-$ver && $Script or $Script -d $HOME/OpenFOAM/$USER-$ver Further Information: https://openfoam.org/download/$ver-macos Note: The container user name appears as "openfoam" but it is just an alias. USAGE exit 1 } docker_image='openfoam/openfoam$ver-graphical-apps' paraview_vers="" mount_dir=$(pwd) custom_xauth="" docker_options="" while [ "$#" -gt 0 ] do case "$1" in -d | -dir) [ "$#" -ge 2 ] || usage "'$1' option requires an argument" mount_dir=$2 shift 2 ;; -h | -help) usage ;; -p | -paraview) # No version specified { [ "$#" -eq 1 ] || [ "$(echo "$2" | cut -c1)" = "-" ] ; } && \ paraview_vers=510 && \ shift 1 && \ continue # Version specified paraview_vers=$2 case "$paraview_vers" in 56|510) ;; *) usage "'$2' is not a valid ParaView version." \ "Valid versions are 56 | 510." ;; esac shift 2 ;; -u | -upgrade) upgrade=yes shift ;; -x | -xhost) custom_xauth=yes shift ;; *) usage "Invalid option '$1'" ;; esac done [ "$paraview_vers" ] && \ echo "Including ParaView $paraview_vers" && \ docker_image="openfoam/openfoam$ver-paraview$paraview_vers" [ -d "$MOUNT_DIR" ] || usage "No directory exists: $MOUNT_DIR" MOUNT_DIR=$(cd "$MOUNT_DIR" && pwd -P) [ -d "$mount_dir" ] || usage "No directory exists: $mount_dir" mount_dir=$(cd "$mount_dir" && pwd -P) [ "$mount_dir" = "$(cd "$HOME" && pwd -P)" ] && \ usage "Mount directory cannot be the user's home directory" \ "Make a subdirectory and run from there, e.g." \ " mkdir -p $HOME/OpenFOAM/$(whoami)-$ver" \ " $Script -d $HOME/OpenFOAM/$(whoami)-$ver" if [ -n "$custom_xauth" ] then xauth_path="$mount_dir/.docker.xauth.$$" touch "$xauth_path" # Generate a custom X-authority file that allows any hostname xauth nlist "$DISPLAY" | sed -e 's/^..../ffff/' | \ xauth -f "$xauth_path" nmerge - docker_options="-e XAUTHORITY=$xauth_path -v $xauth_path:$xauth_path --net=host" fi user_id=$(id -u 2> /dev/null) [ -n "$user_id" ] || usage "Cannot determine current user ID" group_id=$(id -g) home_dir='/home/openfoam' echo "Launching $0" echo "User: \"$(id -un)\" (ID $user_id, group ID $group_id)" ifaces=$(ifconfig | grep ^en | cut -d: -f1) [ "$ifaces" ] || \ usage "Cannot find a network interface for DISPLAY with ifconfig" \ "Please report an issue at http://bugs.openfoam.org" \ " providing the output of the command: ifconfig" for i in $ifaces do ip=$(ifconfig "$i" | grep inet | awk '$1=="inet" {print $2}') [ "$ip" ] && break done [ "$ip" ] || \ usage "Cannot find a network IP for DISPLAY with ifconfig" \ "Please report an issue at https://bugs.openfoam.org" \ " providing the output of the command: ifconfig" xhost + "$ip" [ "$upgrade" ] && docker pull "$docker_image" # shellcheck disable=SC2086 docker run -it \ --rm \ -e DISPLAY=$IP:0 \ -u "$user_id":"$group_id" \ -v /tmp/.X11-unix:/tmp/.X11-unix \ -v "$mount_dir":$home_dir \ $docker_options \ "$docker_image" [ -n "$custom_xauth" ] && [ -e "$xauth_path" ] && rm "$xauth_path" |
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Thanks openfoam11-macos, openfoam10-macos and openfoam-dev-macos scripts corrected. https://dl.openfoam.org/docker/ |
Date Modified | Username | Field | Change |
---|---|---|---|
2024-03-06 16:20 | Ulrich | New Issue | |
2024-03-06 16:20 | Ulrich | File Added: openfoam10-macos_modified | |
2024-03-06 16:20 | Ulrich | File Added: openfoam10-macos_original | |
2024-03-15 14:33 | wyldckat | Relationship added | related to 0004065 |
2024-06-11 09:44 | wyldckat | Relationship added | related to 0004092 |
2024-06-11 09:44 | wyldckat | Relationship added | related to 0004091 |
2024-06-11 09:44 | wyldckat | Relationship added | related to 0004090 |
2024-06-18 07:49 | chris | Assigned To | => chris |
2024-06-18 07:49 | chris | Status | new => closed |
2024-06-18 07:49 | chris | Resolution | open => fixed |
2024-06-18 07:49 | chris | Note Added: 0013263 |