View Issue Details
| ID | Project | Category | View Status | Date Submitted | Last Update |
|---|---|---|---|---|---|
| 0003887 | OpenFOAM | Bug | public | 2022-09-16 16:11 | 2022-10-11 11:19 |
| Reporter | rdutta | Assigned To | henry | ||
| Priority | high | Severity | crash | Reproducibility | always |
| Status | closed | Resolution | no change required | ||
| Platform | Linux | OS | CentOS | OS Version | 7.9.2009 (Core) |
| Product Version | 10 | ||||
| Summary | 0003887: Segmentation fault when #includeFunc included | ||||
| Description | We have had a surprising issue at our HPC recently. The administrator had installed OpenFOAM 10, however, applications give segmentation fault when I add #includeFunc in the controlDict. Even the blockMesh fails. If I remove the #includeFunc scripts from the controlDict, those cases run. | ||||
| Steps To Reproduce | I tried many of the tutorials with function objects, channel395, pitzDaily, but they all fail with #includeFunc. I copied error output with the blockMesh in channel395: /usr/global/sge/default/spool/teal88/job_scripts/242511: line 19: 21087 Segmentation fault (core dumped) blockMesh >> mesh.out Here is the job submission script: #!/bin/bash # Use the current working directory #$ -S /bin/bash #$ -cwd # Use the Engineering queue #$ -q EGR_matlab #$ -l h='!teal95&!teal96' #sets runtime to 72 hours #$ -l h_rt=72:00:00 # requesting 32 processors, change this as needed ##$ -pe ompi 4 # Setup the OpenFOAM environment module purge module load OpenFoam10 module load openmpi4 module load gcc/10.2.1 # Run actual OpenFoam commands modify the line below with your actual commands START=$(date +%s) blockMesh >> mesh.out END=$(date +%s) let TOTAL="${END} - ${START}" echo "Script took ${TOTAL} seconds" | ||||
| Additional Information | CentOS Linux release 7.9.2009 (Core) Compiled with GCC 10.2.1 and openmpi 4.1.1 Batch system is Son of Grid Engine 8.1.8 Submission scripts use modules for openmpi, GCC and OpenFoam 10 environments Environment at runtime: attached in "printenv.txt" | ||||
| Tags | No tags attached. | ||||
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I am not able to reproduce this issue, I have never seen this problem before. |
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@rdutta: In the print out of the runtime environment, notice this line: FOAM_ETC=/home1/global/OpenFOAM-10/etc 1. Does this folder "/home1/global/OpenFOAM-10/etc" really exist and is accessible from all nodes in the cluster? 2. If it does, are you able to run the job in a way that you can test if the respective included files via "includeFunc" are accessible by all processes in all nodes? |
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Attached "printenv.txt", to remove what was posted directly on the "Additional Information" section above. printenv.txt (11,464 bytes)
jmdavis@teal ~]$ printenv
WM_LINK_LANGUAGE=c++
MPI_INCLUDE=/home1/global/openmpi-4.1.1/include
MANPATH=/home1/global/openmpi-4.1.1/share/openmpi:/opt/rh/devtoolset-10/root/usr/share/man:/usr/share/lmod/lmod/share/man:/usr/global/sge/man:/usr/share/man/overrides:/usr/share/man:/usr/local/share/man
FOAM_SOLVERS=/home1/global/OpenFOAM-10/applications/solvers
FOAM_EXT_LIBBIN=/home1/global/ThirdParty-10/platforms/linux64GccDPInt32/lib
FOAM_APPBIN=/home1/global/OpenFOAM-10/platforms/linux64GccDPInt32Opt/bin
XDG_SESSION_ID=42703
WM_COMPILER_TYPE=system
WM_ARCH=linux64
FOAM_TUTORIALS=/home1/global/OpenFOAM-10/tutorials
FOAM_JOB_DIR=/home1/global/jobControl
_ModuleTable003_=ZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL3Vzci9nbG9iYWwvbW9kdWxlZmlsZXM6L2V0Yy9tb2R1bGVmaWxlczovdXNyL3NoYXJlL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvTGludXg6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9Db3JlOi91c3Ivc2hhcmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=
HOSTNAME=teal.chpc.vcu.edu
OMPI_MCA_btl_openib_allow_ib=1
SELINUX_ROLE_REQUESTED=
WM_OSTYPE=POSIX
__LMOD_REF_COUNT_MODULEPATH=/usr/global/modulefiles:1;/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1
TERM=xterm-256color
SHELL=/bin/bash
WM_THIRD_PARTY_DIR=/home1/global/ThirdParty-10
MPI_ARCH_PATH=/home1/global/openmpi-4.1.1
LMOD_ROOT=/usr/share/lmod
WISECONFIGDIR=/usr/share/wise2/
HISTSIZE=1000
MODULEPATH_ROOT=/usr/share/modulefiles
SSH_CLIENT=128.172.189.61 54018 22
FOAM_SITE_APPBIN=/home1/global/site/10/platforms/linux64GccDPInt32Opt/bin
SGE_CELL=default
SGE_ARCH=lx-amd64
NCARG_FONTCAPS=/usr/lib64/ncarg/fontcaps
SELINUX_USE_CURRENT_RANGE=
LMOD_PKG=/usr/share/lmod/lmod
QTDIR=/usr/lib64/qt-3.3
LMOD_VERSION=8.2.7
QTINC=/usr/lib64/qt-3.3/include
SSH_TTY=/dev/pts/6
WM_PROJECT_VERSION=10
WM_CXXFLAGS=-m64
WM_CFLAGS=-m64
FOAM_APP=/home1/global/OpenFOAM-10/applications
__LMOD_REF_COUNT_LOADEDMODULES=gcc/10.2.1:1;openmpi4:1;OpenFoam10:1
QT_GRAPHICSSYSTEM_CHECKED=1
MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi
PCP_DIR=/opt/rh/devtoolset-10/root
USER=jmdavis
FOAM_SITE_LIBBIN=/home1/global/site/10/platforms/linux64GccDPInt32Opt/lib
LD_LIBRARY_PATH=/home1/global/ThirdParty-10/platforms/linux64Gcc/gperftools-svn/lib:/home1/global/OpenFOAM-10/platforms/linux64GccDPInt32Opt/lib/openmpi-system:/home1/global/ThirdParty-10/platforms/linux64GccDPInt32/lib/openmpi-system:/home1/global/openmpi-4.1.1/lib:/root/OpenFOAM/root-10/platforms/linux64GccDPInt32Opt/lib:/home1/global/site/10/platforms/linux64GccDPInt32Opt/lib:/home1/global/OpenFOAM-10/platforms/linux64GccDPInt32Opt/lib:/home1/global/ThirdParty-10/platforms/linux64GccDPInt32/lib:/home1/global/OpenFOAM-10/platforms/linux64GccDPInt32Opt/lib/dummy:/opt/rh/devtoolset-10/root/usr/lib64:/opt/rh/devtoolset-10/root/usr/lib:/opt/rh/devtoolset-10/root/usr/lib64/dyninst:/opt/rh/devtoolset-10/root/usr/lib/dyninst
LMOD_sys=Linux
LS_COLORS=rs=0:di=38;5;27:ln=38;5;51:mh=44;38;5;15:pi=40;38;5;11:so=38;5;13:do=38;5;5:bd=48;5;232;38;5;11:cd=48;5;232;38;5;3:or=48;5;232;38;5;9:mi=05;48;5;232;38;5;15:su=48;5;196;38;5;15:sg=48;5;11;38;5;16:ca=48;5;196;38;5;226:tw=48;5;10;38;5;16:ow=48;5;10;38;5;21:st=48;5;21;38;5;15:ex=38;5;34:*.tar=38;5;9:*.tgz=38;5;9:*.arc=38;5;9:*.arj=38;5;9:*.taz=38;5;9:*.lha=38;5;9:*.lz4=38;5;9:*.lzh=38;5;9:*.lzma=38;5;9:*.tlz=38;5;9:*.txz=38;5;9:*.tzo=38;5;9:*.t7z=38;5;9:*.zip=38;5;9:*.z=38;5;9:*.Z=38;5;9:*.dz=38;5;9:*.gz=38;5;9:*.lrz=38;5;9:*.lz=38;5;9:*.lzo=38;5;9:*.xz=38;5;9:*.bz2=38;5;9:*.bz=38;5;9:*.tbz=38;5;9:*.tbz2=38;5;9:*.tz=38;5;9:*.deb=38;5;9:*.rpm=38;5;9:*.jar=38;5;9:*.war=38;5;9:*.ear=38;5;9:*.sar=38;5;9:*.rar=38;5;9:*.alz=38;5;9:*.ace=38;5;9:*.zoo=38;5;9:*.cpio=38;5;9:*.7z=38;5;9:*.rz=38;5;9:*.cab=38;5;9:*.jpg=38;5;13:*.jpeg=38;5;13:*.gif=38;5;13:*.bmp=38;5;13:*.pbm=38;5;13:*.pgm=38;5;13:*.ppm=38;5;13:*.tga=38;5;13:*.xbm=38;5;13:*.xpm=38;5;13:*.tif=38;5;13:*.tiff=38;5;13:*.png=38;5;13:*.svg=38;5;13:*.svgz=38;5;13:*.mng=38;5;13:*.pcx=38;5;13:*.mov=38;5;13:*.mpg=38;5;13:*.mpeg=38;5;13:*.m2v=38;5;13:*.mkv=38;5;13:*.webm=38;5;13:*.ogm=38;5;13:*.mp4=38;5;13:*.m4v=38;5;13:*.mp4v=38;5;13:*.vob=38;5;13:*.qt=38;5;13:*.nuv=38;5;13:*.wmv=38;5;13:*.asf=38;5;13:*.rm=38;5;13:*.rmvb=38;5;13:*.flc=38;5;13:*.avi=38;5;13:*.fli=38;5;13:*.flv=38;5;13:*.gl=38;5;13:*.dl=38;5;13:*.xcf=38;5;13:*.xwd=38;5;13:*.yuv=38;5;13:*.cgm=38;5;13:*.emf=38;5;13:*.axv=38;5;13:*.anx=38;5;13:*.ogv=38;5;13:*.ogx=38;5;13:*.aac=38;5;45:*.au=38;5;45:*.flac=38;5;45:*.mid=38;5;45:*.midi=38;5;45:*.mka=38;5;45:*.mp3=38;5;45:*.mpc=38;5;45:*.ogg=38;5;45:*.ra=38;5;45:*.wav=38;5;45:*.axa=38;5;45:*.oga=38;5;45:*.spx=38;5;45:*.xspf=38;5;45:
WM_COMPILER_LIB_ARCH=64
MPI_BUFFER_SIZE=20000000
FOAM_SRC=/home1/global/OpenFOAM-10/src
FOAM_SIGFPE=.
WM_PROJECT_INST_DIR=/home1/global
ParaView_DIR=/home1/global/ThirdParty-10/platforms/linux64Gcc/ParaView-5.6.3
WM_PROJECT_DIR=/home1/global/OpenFOAM-10
WM_CXX=g++
FOAM_UTILITIES=/home1/global/OpenFOAM-10/applications/utilities
__LMOD_REF_COUNT__LMFILES_=/usr/global/modulefiles/gcc/10.2.1:1;/usr/global/modulefiles/openmpi4:1;/usr/global/modulefiles/OpenFoam10:1
MPI_LIB=/home1/global/openmpi-4.1.1/lib
WM_LABEL_OPTION=Int32
NCARG_GRAPHCAPS=/usr/lib64/ncarg/graphcaps
WM_PROJECT=OpenFOAM
WM_LDFLAGS=-m64
WM_COMPILER=Gcc
WM_MPLIB=SYSTEMOPENMPI
_ModuleTable001_=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
MAIL=/var/spool/mail/jmdavis
PATH=/home1/global/ThirdParty-10/platforms/linux64Gcc/gperftools-svn/bin:/home1/global/ThirdParty-10/platforms/linux64Gcc/cmake-*/bin:/root/OpenFOAM/root-10/platforms/linux64GccDPInt32Opt/bin:/home1/global/site/10/platforms/linux64GccDPInt32Opt/bin:/home1/global/OpenFOAM-10/platforms/linux64GccDPInt32Opt/bin:/home1/global/OpenFOAM-10/bin:/home1/global/OpenFOAM-10/wmake:/home1/global/openmpi-4.1.1/include:/home1/global/openmpi-4.1.1/bin:/opt/rh/devtoolset-10/root/usr/bin:/usr/global/sge/bin:/usr/global/sge/bin/lx-amd64:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin
FOAM_USER_LIBBIN=/root/OpenFOAM/root-10/platforms/linux64GccDPInt32Opt/lib
MPI_BIN=/home1/global/openmpi-4.1.1/bin
MPI_COMPILER=openmpi-x86_64
WM_CC=gcc
ParaView_GL=mesa
PWD=/home1/jmdavis
__LMOD_REF_COUNT_MPI_ARCH_PATH=/home1/global/openmpi-4.1.1:1
_LMFILES_=/usr/global/modulefiles/gcc/10.2.1:/usr/global/modulefiles/openmpi4:/usr/global/modulefiles/OpenFoam10
NCARG_ROOT=/usr
FOAM_ETC=/home1/global/OpenFOAM-10/etc
__LMOD_REF_COUNT_PYTHONPATH=/usr/lib64/python2.7/site-packages/openmpi:1
LANG=en_US.UTF-8
NCARG_DATABASE=/usr/lib64/ncarg/database
MODULEPATH=/usr/global/modulefiles:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core
FOAM_INST_DIR=/home1/global
__LMOD_REF_COUNT_INFOPATH=/opt/rh/devtoolset-10/root/usr/share/info:1
_ModuleTable_Sz_=3
SGE_ROOT=/usr/global/sge
LOADEDMODULES=gcc/10.2.1:openmpi4:OpenFoam10
SELINUX_LEVEL_REQUESTED=
LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod
WM_COMPILE_OPTION=Opt
FOAM_MPI=openmpi-system
FOAM_LIBBIN=/home1/global/OpenFOAM-10/platforms/linux64GccDPInt32Opt/lib
NCARG_LIB=/usr/lib64/ncarg
HISTCONTROL=ignoredups
WM_DIR=/home1/global/OpenFOAM-10/wmake
ParaView_VERSION=5.6.3
MPI_SYSCONFIG=/home1/global/openmpi-4.1.1/etc
WM_LABEL_SIZE=32
NCARG_NCARG=/usr/share/ncarg
SHLVL=1
HOME=/home1/jmdavis
__LMOD_REF_COUNT_PATH=/home1/global/ThirdParty-10/platforms/linux64Gcc/gperftools-svn/bin:1;/home1/global/ThirdParty-10/platforms/linux64Gcc/cmake-*/bin:1;/root/OpenFOAM/root-10/platforms/linux64GccDPInt32Opt/bin:1;/home1/global/site/10/platforms/linux64GccDPInt32Opt/bin:1;/home1/global/OpenFOAM-10/platforms/linux64GccDPInt32Opt/bin:1;/home1/global/OpenFOAM-10/bin:1;/home1/global/OpenFOAM-10/wmake:1;/home1/global/openmpi-4.1.1/include:1;/home1/global/openmpi-4.1.1/bin:1;/opt/rh/devtoolset-10/root/usr/bin:1;/usr/global/sge/bin:1;/usr/global/sge/bin/lx-amd64:1;/usr/lib64/qt-3.3/bin:1;/usr/lib64/ccache:1;/usr/local/bin:1;/usr/bin:1;/usr/local/sbin:1;/usr/sbin:1
ParaView_MAJOR=5.6
GDL_PATH=+/usr/share/gnudatalanguage
MPI_SUFFIX=_openmpi
_ModuleTable002_=InN0YWNrRGVwdGgiXT0wLFsic3RhdHVzIl09ImFjdGl2ZSIsWyJ1c2VyTmFtZSJdPSJnY2MvMTAuMi4xIix9LG9wZW5tcGk0PXtbImZuIl09Ii91c3IvZ2xvYmFsL21vZHVsZWZpbGVzL29wZW5tcGk0IixbImZ1bGxOYW1lIl09Im9wZW5tcGk0IixbImxvYWRPcmRlciJdPTIscHJvcFQ9e30sWyJzdGFja0RlcHRoIl09MCxbInN0YXR1cyJdPSJhY3RpdmUiLFsidXNlck5hbWUiXT0ib3Blbm1waTQiLH0sfSxtcGF0aEE9eyIvdXNyL2dsb2JhbC9tb2R1bGVmaWxlcyIsIi9ldGMvbW9kdWxlZmlsZXMiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzIiwiL3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eCIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvQ29yZSIsIi91c3Ivc2hhcmUvbG1v
FOAM_SETTINGS=.
MPI_MAN=/home1/global/openmpi-4.1.1/share/man
BASH_ENV=/usr/share/lmod/lmod/init/bash
PYTHONPATH=/usr/lib64/python2.7/site-packages/openmpi
LOGNAME=jmdavis
WM_PROJECT_USER_DIR=/root/OpenFOAM/root-10
QTLIB=/usr/lib64/qt-3.3/lib
CVS_RSH=ssh
FOAM_RUN=/root/OpenFOAM/root-10/run
XDG_DATA_DIRS=/home1/jmdavis/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share:/usr/share
SSH_CONNECTION=128.172.189.61 54018 192.168.66.134 22
MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi-x86_64
MODULESHOME=/usr/share/lmod/lmod
WM_OPTIONS=linux64GccDPInt32Opt
PKG_CONFIG_PATH=/opt/rh/devtoolset-10/root/usr/lib64/pkgconfig
__LMOD_REF_COUNT_LD_LIBRARY_PATH=/home1/global/ThirdParty-10/platforms/linux64Gcc/gperftools-svn/lib:1;/home1/global/OpenFOAM-10/platforms/linux64GccDPInt32Opt/lib/openmpi-system:1;/home1/global/ThirdParty-10/platforms/linux64GccDPInt32/lib/openmpi-system:1;/home1/global/openmpi-4.1.1/lib:2;/root/OpenFOAM/root-10/platforms/linux64GccDPInt32Opt/lib:1;/home1/global/site/10/platforms/linux64GccDPInt32Opt/lib:1;/home1/global/OpenFOAM-10/platforms/linux64GccDPInt32Opt/lib:1;/home1/global/ThirdParty-10/platforms/linux64GccDPInt32/lib:1;/home1/global/OpenFOAM-10/platforms/linux64GccDPInt32Opt/lib/dummy:1;/opt/rh/devtoolset-10/root/usr/lib64:3;/opt/rh/devtoolset-10/root/usr/lib:3;/opt/rh/devtoolset-10/root/usr/lib64/dyninst:2;/opt/rh/devtoolset-10/root/usr/lib/dyninst:2
LMOD_SETTARG_FULL_SUPPORT=no
LESSOPEN=||/usr/bin/lesspipe.sh %s
INFOPATH=/opt/rh/devtoolset-10/root/usr/share/info
__LMOD_REF_COUNT_PKG_CONFIG_PATH=/opt/rh/devtoolset-10/root/usr/lib64/pkgconfig:1
SGE_CLUSTER_NAME=teal
XDG_RUNTIME_DIR=/run/user/1508
WM_PRECISION_OPTION=DP
__LMOD_REF_COUNT_MANPATH=/home1/global/openmpi-4.1.1/share/openmpi:1;/opt/rh/devtoolset-10/root/usr/share/man:1;/usr/share/lmod/lmod/share/man:1;/usr/global/sge/man:1;/usr/share/man/overrides:1;/usr/share/man:1;/usr/local/share/man:1
LMOD_DIR=/usr/share/lmod/lmod/libexec
WM_ARCH_OPTION=64
FOAM_USER_APPBIN=/root/OpenFOAM/root-10/platforms/linux64GccDPInt32Opt/bin
BASH_FUNC_module()=() { eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh)
}
BASH_FUNC_ml()=() { eval $($LMOD_DIR/ml_cmd "$@")
}
_=/usr/bin/printenv
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Thanks for the reply. We have checked that the folder /home1/global/OpenFOAM-10/etc is accessible from all the nodes in the cluster. I have noticed that applications fail when we use any #include directive even if the included scripts are within the system directory. E.g, The motorbike tutorials with the following functions also fail. functions { #include "streamlines" #include "cuttingPlane" #include "forceCoeffs" } Besides, some of the foam environment variables (e.g., $FOAM_RUN) directs to the root as shown below: [rdutta@teal bin]$ cd $FOAM_RUN -bash: cd: /root/OpenFOAM/root-10/run: Permission denied [rdutta@teal bin]$ cd $FOAM_ETC [rdutta@teal etc]$ pwd /home1/global/OpenFOAM-10/etc |
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""" Besides, some of the foam environment variables (e.g., $FOAM_RUN) directs to the root as shown below: [rdutta@teal bin]$ cd $FOAM_RUN -bash: cd: /root/OpenFOAM/root-10/run: Permission denied """ This sounds to me that your openfoam environment is not properly set? Do you use a modified bashrc script that cluster users execute before using OpenFoam? Perhaps the "WM_PROJECT_USER_DIR=" is pointing to wrong place and not updated per user as it should be. Could you ask your cluster admin how the environment was set when he compiled OF? |
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if it can help, on a CentOS 7.9 with similar configuration I have the same problem: applications fail when any #include directive is used, starting from v9 included. For example tutorials/heatTransfer/chtMultiRegionFoam/reverseBurner with v8 works, with v9 and v10 it crashes. So this problem manifests after v8 release and before https://github.com/OpenFOAM/OpenFOAM-9/commit/98b90398f136d8a3131a00fcc8ab7397ea34825e |
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@rdutta and @lorenzotrevisan: Do you know if any specific installation instructions were followed and/or adapted from? Because I'm suspecting that this is an issue with SELinux, namely the executable does not have enough permissions to read from certain files, although this is all too strange, given that it is able to read from field files and other case files just fine... So even if I were to try and reproduce this in a CentOS 7.9 virtual machine, knowing a few more details would help reproduce this issue. |
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On this machine SELinux is Disabled. gcc with C++14 support was added with precompiled devtoolset-11 and installed with softwarecollections. With v8 compiled with system gcc-4.8.5 I don't have any problem. |
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I feel like this problem is not OF side issue but I feel like this problem looks like environment variables problem at your HPC system like @wyldckat mentoined. At least, I may confirm that I tested in several different HPC systems based in my country and it works well with OF-10 and OF-dev. What you may check, you may go into $FOAM_ETC and there you may check bashrc and confirm $FOAM_INST_DIR and other settings. Another thing to test might be cloning source code and compiling in your home folder. |
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I faced same problem when installing dev-version on a CentOS-7.9 cluster. According to the reply on CFD online (https://www.cfd-online.com/Forums/openfoam-installation/241354-openfoam-dev-centos-7-9-segmentation-fault-when-executing-any-application.html), it can be solved with a self-compiled gcc-5.5.0. I never tried gcc-5.5.0, but for me it was solved with a recently self-compiled gcc-12.1.0 compiler. So may it is somehow related to the precompiled compiler-versions? |
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On my side I can confirm that removing the pre-compiled devtoolset-11, and compiling locally gcc-5.5.0 following the instruction found here https://gcc.gnu.org/wiki/InstallingGCC, resolve the problem. Thanks jkau, thanks Bruno and thanks to all. |
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Bug in CentOS 7.9 |
| Date Modified | Username | Field | Change |
|---|---|---|---|
| 2022-09-16 16:11 | rdutta | New Issue | |
| 2022-09-16 17:53 | henry | Note Added: 0012741 | |
| 2022-09-16 18:04 | wyldckat | Note Added: 0012742 | |
| 2022-09-16 18:07 | wyldckat | Note Added: 0012743 | |
| 2022-09-16 18:07 | wyldckat | File Added: printenv.txt | |
| 2022-09-16 18:07 | wyldckat | Additional Information Updated | |
| 2022-09-20 21:41 | rdutta | Note Added: 0012746 | |
| 2022-09-22 13:53 | peksa | Note Added: 0012749 | |
| 2022-09-23 14:46 | lorenzotrevisan | Note Added: 0012751 | |
| 2022-09-23 15:09 | wyldckat | Note Added: 0012752 | |
| 2022-09-23 15:52 | lorenzotrevisan | Note Added: 0012753 | |
| 2022-09-23 17:29 | hsncelik | Note Added: 0012754 | |
| 2022-09-26 08:56 | jkau | Note Added: 0012755 | |
| 2022-09-26 15:20 | lorenzotrevisan | Note Added: 0012756 | |
| 2022-09-26 15:34 | henry | Assigned To | => henry |
| 2022-09-26 15:34 | henry | Status | new => closed |
| 2022-09-26 15:34 | henry | Resolution | open => no change required |
| 2022-09-26 15:34 | henry | Note Added: 0012757 | |
| 2022-10-11 11:19 | wyldckat | Relationship added | related to 0003898 |
