View Issue Details
| ID | Project | Category | View Status | Date Submitted | Last Update |
|---|---|---|---|---|---|
| 0003613 | OpenFOAM | Bug | public | 2021-01-14 07:37 | 2021-01-15 09:53 |
| Reporter | jtriesch | Assigned To | henry | ||
| Priority | normal | Severity | crash | Reproducibility | always |
| Status | resolved | Resolution | fixed | ||
| Platform | GNU/Linux | OS | Ubuntu | OS Version | 20.04 |
| Product Version | dev | ||||
| Fixed in Version | dev | ||||
| Summary | 0003613: setFields breaks some time-varying boundary conditions, i.e. falsely replacing dictionary keyword | ||||
| Description | When using setFields with some time-varying boundary conditions (e.g., sine), the 'amplitude' dictionary entry is falsely replaced by multiple keyword 'value' entries in '0' folder. This breaks the required keyword entries for subsequent solver runs. Apparently this does not affect the 'coded' BC used in the examples below. | ||||
| Steps To Reproduce | Run the modified 'pitzDailyPulse' tutorial cases attached to this report. 1. Added runApplication setFields to 'Allrun' 2. Added setFields dictionary to 'system' folder 3. Modified p -> boundaryField -> outlet -> type (e.g. uniformFixedValue etc, see examples) 4. Execute 'Allrun' for various cases Case with uniformFixedValue and 'type sine' fails with 'keyword amplitude is undefined in dictionary' message (see attached log files). | ||||
| Additional Information | I suspect this issue has been introduced to OpenFOAM-dev sometime between 6-Oct-2020 and 13-Jan-2021. | ||||
| Tags | No tags attached. | ||||
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log.blockMesh (3,254 bytes)
/*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Version: dev
\\/ M anipulation |
\*---------------------------------------------------------------------------*/
Build : dev-8182a0cff62c
Exec : blockMesh -dict /home/jan/OpenFOAM/OpenFOAM-dev/tutorials/resources/blockMesh/pitzDaily
Date : Jan 14 2021
Time : 08:31:12
Host : "jan-XPS-13-9370"
PID : 3641695
I/O : uncollated
Case : /home/jan/OpenFOAM/jan-dev/run/setFields_tests/pitzDailyPulse_uniformValue_sine
nProcs : 1
sigFpe : Enabling floating point exception trapping (FOAM_SIGFPE).
fileModificationChecking : Monitoring run-time modified files using timeStampMaster (fileModificationSkew 10)
allowSystemOperations : Allowing user-supplied system call operations
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
Create time
Creating block mesh from
"/home/jan/OpenFOAM/OpenFOAM-dev/tutorials/resources/blockMesh/pitzDaily"
Creating block edges
No non-planar block faces defined
Creating topology blocks
Creating topology patches
Creating block mesh topology
Check topology
Basic statistics
Number of internal faces : 5
Number of boundary faces : 20
Number of defined boundary faces : 20
Number of undefined boundary faces : 0
Checking patch -> block consistency
Creating block offsets
Creating merge list .
Creating polyMesh from blockMesh
Creating patches
Creating cells
Creating points with scale 0.001
Block 0 cell size :
i : 0.00158284 .. 0.000791418
j : 0.000318841 .. 0.000420268
k : 0.001
Block 1 cell size :
i : 0.000528387 .. 0.00211355
j : 0.00112889 .. 0.000360188 0.00112841 .. 0.000361677 0.00112889 .. 0.000360188 0.00112841 .. 0.000361677
k : 0.001
Block 2 cell size :
i : 0.000528387 .. 0.00211355
j : 0.000318841 .. 0.000420268 0.000320918 .. 0.000419851 0.000318841 .. 0.000420268 0.000320918 .. 0.000419851
k : 0.001
Block 3 cell size :
i : 0.0020578 .. 0.00514451 0.00205699 .. 0.00514248 0.0020578 .. 0.00514451 0.00205699 .. 0.00514248
j : 0.000940741 .. 0.000940741 0.0009328 .. 0.0009328 0.000940741 .. 0.000940741 0.0009328 .. 0.0009328
k : 0.001
Block 4 cell size :
i : 0.0020466 .. 0.00511651 0.00204663 .. 0.00511656 0.0020466 .. 0.00511651 0.00204663 .. 0.00511656
j : 0.00112889 .. 0.000257962 0.00111936 .. 0.000255785 0.00112889 .. 0.000257962 0.00111936 .. 0.000255785
k : 0.001
There are no merge patch pairs edges
Writing polyMesh
----------------
Mesh Information
----------------
boundingBox: (-0.0206 -0.0254 -0.0005) (0.29 0.0254 0.0005)
nPoints: 25012
nCells: 12225
nFaces: 49180
nInternalFaces: 24170
----------------
Patches
----------------
patch 0 (start: 24170 size: 30) name: inlet
patch 1 (start: 24200 size: 57) name: outlet
patch 2 (start: 24257 size: 223) name: upperWall
patch 3 (start: 24480 size: 250) name: lowerWall
patch 4 (start: 24730 size: 24450) name: frontAndBack
End
log.pimpleFoam (1,688 bytes)
/*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Version: dev
\\/ M anipulation |
\*---------------------------------------------------------------------------*/
Build : dev-8182a0cff62c
Exec : pimpleFoam
Date : Jan 14 2021
Time : 08:31:17
Host : "jan-XPS-13-9370"
PID : 3642024
I/O : uncollated
Case : /home/jan/OpenFOAM/jan-dev/run/setFields_tests/pitzDailyPulse_uniformValue_sine
nProcs : 1
sigFpe : Enabling floating point exception trapping (FOAM_SIGFPE).
fileModificationChecking : Monitoring run-time modified files using timeStampMaster (fileModificationSkew 10)
allowSystemOperations : Allowing user-supplied system call operations
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
Create time
Create mesh for time = 0
PIMPLE: No convergence criteria found
PIMPLE: Operating solver in transient mode with 1 outer corrector
PIMPLE: Operating solver in PISO mode
Reading field p
--> FOAM FATAL IO ERROR:
keyword amplitude is undefined in dictionary "/home/jan/OpenFOAM/jan-dev/run/setFields_tests/pitzDailyPulse_uniformValue_sine/0/p/boundaryField/outlet/uniformValue"
file: /home/jan/OpenFOAM/jan-dev/run/setFields_tests/pitzDailyPulse_uniformValue_sine/0/p/boundaryField/outlet/uniformValue from line 33 to line 36.
From function const Foam::entry& Foam::dictionary::lookupEntry(const Foam::word&, bool, bool) const
in file db/dictionary/dictionary.C at line 790.
FOAM exiting
log.setFields (2,007 bytes)
/*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration | Website: https://openfoam.org
\\ / A nd | Version: dev
\\/ M anipulation |
\*---------------------------------------------------------------------------*/
Build : dev-8182a0cff62c
Exec : setFields
Date : Jan 14 2021
Time : 08:31:13
Host : "jan-XPS-13-9370"
PID : 3641707
I/O : uncollated
Case : /home/jan/OpenFOAM/jan-dev/run/setFields_tests/pitzDailyPulse_uniformValue_sine
nProcs : 1
sigFpe : Enabling floating point exception trapping (FOAM_SIGFPE).
fileModificationChecking : Monitoring run-time modified files using timeStampMaster (fileModificationSkew 10)
allowSystemOperations : Allowing user-supplied system call operations
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
Create time
Create mesh for time = 0
Reading setFieldsDict
Setting field default values
Setting internal values of volScalarField p
Setting internal values of volVectorField U
Using dynamicCode for Function1 pulse at line 29 in "/home/jan/OpenFOAM/jan-dev/run/setFields_tests/pitzDailyPulse_uniformValue_sine/0/U/boundaryField/inlet/uniformValue"
Creating new library in "dynamicCode/pulse/platforms/linux64GccDPInt32Opt/lib/libpulse_836c01257f56160729021142ea45930e4c6506e1.so"
Invoking "wmake -s libso /home/jan/OpenFOAM/jan-dev/run/setFields_tests/pitzDailyPulse_uniformValue_sine/dynamicCode/pulse"
wmake libso /home/jan/OpenFOAM/jan-dev/run/setFields_tests/pitzDailyPulse_uniformValue_sine/dynamicCode/pulse
ln: ./lnInclude
wmkdep: Function1Template.C
Ctoo: Function1Template.C
ld: /home/jan/OpenFOAM/jan-dev/run/setFields_tests/pitzDailyPulse_uniformValue_sine/dynamicCode/pulse/../platforms/linux64GccDPInt32Opt/lib/libpulse_836c01257f56160729021142ea45930e4c6506e1.so
Setting field region values
End
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Thanks for the clear and detailed bug-report, with this it was easy to find the issue. Try commit c6f69e7987d4ca2e4cd6f75fdcba074f6cc39fb1 |
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Thanks for the fast fix. I confirm this issue is solved for me. |
| Date Modified | Username | Field | Change |
|---|---|---|---|
| 2021-01-14 07:37 | jtriesch | New Issue | |
| 2021-01-14 07:37 | jtriesch | File Added: log.blockMesh | |
| 2021-01-14 07:37 | jtriesch | File Added: log.pimpleFoam | |
| 2021-01-14 07:37 | jtriesch | File Added: log.setFields | |
| 2021-01-14 07:37 | jtriesch | File Added: setFields_tests.tar.gz | |
| 2021-01-14 10:55 | henry | Note Added: 0011814 | |
| 2021-01-15 06:38 | jtriesch | Note Added: 0011820 | |
| 2021-01-15 09:53 | henry | Assigned To | => henry |
| 2021-01-15 09:53 | henry | Status | new => resolved |
| 2021-01-15 09:53 | henry | Resolution | open => fixed |
| 2021-01-15 09:53 | henry | Fixed in Version | => dev |
