View Issue Details
| ID | Project | Category | View Status | Date Submitted | Last Update |
|---|---|---|---|---|---|
| 0003496 | OpenFOAM | Bug | public | 2020-05-17 08:50 | 2020-06-01 11:21 |
| Reporter | gskillas | Assigned To | will | ||
| Priority | normal | Severity | minor | Reproducibility | always |
| Status | closed | Resolution | no change required | ||
| Platform | GNU/Linux | OS | OpenSuSE Leap | OS Version | 15.1 |
| Product Version | dev | ||||
| Summary | 0003496: foamyHexMesh does not compile, failing CGAL include | ||||
| Description | Using CGAL 5.0.2 after the latest changes compilation of foamy fails: g++ -std=c++11 -m64 -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wold-style-cast -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -Wno-attributes -O3 -DNoRepository -ftemplate-depth-100 -frounding-math -DNDEBUG -DCGAL_INEXACT -std=c++14 -DCGAL_NO_DEPRECATED_CODE -DCGAL_HEADER_ONLY -I/home/cfd/OpenFOAM/ThirdParty-dev/CGAL-5.0.2/include -Wno-old-style-cast -Wno-unused-local-typedefs -Wno-array-bounds -I/home/cfd/OpenFOAM/OpenFOAM-dev/src/finiteVolume/lnInclude -I/home/cfd/OpenFOAM/OpenFOAM-dev/src/meshTools/lnInclude -I/home/cfd/OpenFOAM/OpenFOAM-dev/src/parallel/decompose/decompositionMethods/lnInclude -I/home/cfd/OpenFOAM/OpenFOAM-dev/src/fileFormats/lnInclude -I/home/cfd/OpenFOAM/OpenFOAM-dev/src/dynamicMesh/lnInclude -I/home/cfd/OpenFOAM/OpenFOAM-dev/src/surfMesh/lnInclude -I/home/cfd/OpenFOAM/OpenFOAM-dev/src/triSurface/lnInclude -I/home/cfd/OpenFOAM/OpenFOAM-dev/src/sampling/lnInclude -I/home/cfd/OpenFOAM/OpenFOAM-dev/src/mesh/snappyHexMesh/lnInclude -IPrintTable -IlnInclude -I. -I/home/cfd/OpenFOAM/OpenFOAM-dev/src/OpenFOAM/lnInclude -I/home/cfd/OpenFOAM/OpenFOAM-dev/src/OSspecific/POSIX/lnInclude -fPIC -c conformalVoronoiMesh/featurePointConformer/pointFeatureEdgesTypes.C -o /home/cfd/OpenFOAM/OpenFOAM-dev/platforms/linux64GccDPInt32Opt/applications/utilities/mesh/generation/foamyMesh/conformalVoronoiMesh/conformalVoronoiMesh/featurePointConformer/pointFeatureEdgesTypes.o In file included from lnInclude/CGALTriangulation3Ddefs.H:44:0, from DelaunayMeshTools/DelaunayMeshTools.H:45, from DelaunayMeshTools/DelaunayMeshTools.C:26: lnInclude/indexedCell.H:41:10: fatal error: CGAL/Delaunay_triangulation_cell_base_with_circumcenter_3.h: No such file or directory #include "CGAL/Delaunay_triangulation_cell_base_with_circumcenter_3.h" ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ compilation terminated. | ||||
| Steps To Reproduce | Edit etc/config.sh/CGAL to boost_version=boost-system #cgal_version=cgal-system #cgal_version=CGAL-4.10 cgal_version=CGAL-5.0.2 then > foam; ./Allwmake -update or > foam; ./Allwmake | ||||
| Tags | No tags attached. | ||||
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It works locally for me. The include path in the compile command seems correct. -I/home/cfd/OpenFOAM/ThirdParty-dev/CGAL-5.0.2/include Does the header file referenced in the error message exist in that location? /home/cfd/OpenFOAM/ThirdParty-dev/CGAL-5.0.2/include/CGAL/Delaunay_triangulation_cell_base_with_circumcenter_3.h Does running the Allwclean in the foamyMesh directory beforehand help? |
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Hello Will the include directory does not exist. The path to the file is ./Triangulation_3/include/CGAL/Delaunay_triangulation_cell_base_with_circumcenter_3.h Allwclean (obviously) does not help Best, George |
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Full path: /home/cfd/OpenFOAM/ThirdParty-dev/CGAL-5.0.2/Triangulation_3/include/CGAL/Delaunay_triangulation_cell_base_with_circumcenter_3.h |
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You need to unpack the sources into your ThirdParty-dev if you're not using cgal-system. Unpack this: https://github.com/CGAL/cgal/releases/download/releases%2FCGAL-5.0.2/CGAL-5.0.2.tar.xz Here: /home/cfd/OpenFOAM/ThirdParty-dev/CGAL-5.0.2 |
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Hello Will the sources are there: ~/OpenFOAM/ThirdParty-dev > ls cgal-releases-CGAL-5.0.2.tar.gz CGAL-5.0.2/ cgal-releases-CGAL-5.0.2.tar.gz CGAL-5.0.2/: AABB_tree CGAL_Core Envelope_2 Interval_support Nef_2 Polygon_mesh_processing Set_movable_separability_2 Surface_mesh_simplification Advancing_front_surface_reconstruction CGAL_ImageIO Envelope_3 Inventor Nef_3 Polyhedron Shape_detection Surface_mesh_skeletonization Algebraic_foundations CGAL_ipelets Filtered_kernel Jet_fitting_3 Nef_S2 Polyhedron_IO Skin_surface_3 Surface_sweep_2 Algebraic_kernel_d Circular_kernel_2 Generalized_map Kernel_23 NewKernel_d Polyline_simplification_2 Snap_rounding_2 TDS_2 Algebraic_kernel_for_circles Circular_kernel_3 Generator Kernel_d Number_types Polynomial Solver_interface TDS_3 Algebraic_kernel_for_spheres Circulator Geomview LEDA OpenNL Polytope_distance_d Spatial_searching Testsuite Alpha_shapes_2 Classification GraphicsView LICENSE.md Optimal_transportation_reconstruction_2 Principal_component_analysis Spatial_sorting Three Alpha_shapes_3 CMakeLists.txt HalfedgeDS Linear_cell_complex Optimisation_basic Principal_component_analysis_LGPL STL_Extension Triangulation Apollonius_graph_2 cmake_uninstall.cmake.in Hash_map MacOSX Partition_2 Profiling_tools Straight_skeleton_2 Triangulation_2 Arithmetic_kernel Combinatorial_map Heat_method_3 Maintenance Periodic_2_triangulation_2 Property_map Stream_lines_2 Triangulation_3 Arrangement_on_surface_2 Cone_spanners_2 Homogeneous_kernel Matrix_search Periodic_3_mesh_3 QP_solver Stream_support Union_find Barycentric_coordinates_2 Convex_decomposition_3 Hyperbolic_triangulation_2 Mesh_2 Periodic_3_triangulation_3 Random_numbers Subdivision_method_3 Visibility_2 BGL Convex_hull_2 Inscribed_areas Mesh_3 Periodic_4_hyperbolic_triangulation_2 README.md Surface_mesh Voronoi_diagram_2 Boolean_set_operations_2 Convex_hull_3 Installation Mesher_level Point_set_2 Ridges_3 Surface_mesh_approximation wininst Bounding_volumes Convex_hull_d INSTALL.md Minkowski_sum_2 Point_set_3 Scale_space_reconstruction_3 Surface_mesh_deformation Box_intersection_d copyright Interpolation Minkowski_sum_3 Point_set_processing_3 Scripts Surface_mesher Cartesian_kernel Distance_2 Intersections_2 Miscellany Poisson_surface_reconstruction_3 SearchStructures Surface_mesh_parameterization ccpp.yml Distance_3 Intersections_3 Modifier Polygon Segment_Delaunay_graph_2 Surface_mesh_segmentation CGALConfig.cmake Documentation Interval_skip_list Modular_arithmetic Polygonal_surface_reconstruction Segment_Delaunay_graph_Linf_2 Surface_mesh_shortest_path ~/OpenFOAM/ThirdParty-dev > It seems that the include directory is under Installation: ~/OpenFOAM/ThirdParty-dev/CGAL-5.0.2 > dir Installation/ total 352 -rw-r--r-- 1 cfd users 1724 Feb 14 14:53 AUTHORS drwxr-xr-x 4 cfd users 59 Feb 14 14:53 auxiliary -rw-r--r-- 1 cfd users 155 Feb 14 14:53 CGALConfig.cmake -rw-r--r-- 1 cfd users 219104 Feb 14 14:53 CHANGES.md drwxr-xr-x 3 cfd users 20 Feb 14 14:53 cmake -rw-r--r-- 1 cfd users 54737 Feb 14 14:53 CMakeLists.txt drwxr-xr-x 2 cfd users 27 Feb 14 14:53 demo drwxr-xr-x 4 cfd users 79 Feb 14 14:53 doc_html drwxr-xr-x 2 cfd users 27 Feb 14 14:53 examples drwxr-xr-x 3 cfd users 17 Feb 14 14:53 include -rw-r--r-- 1 cfd users 462 Feb 14 14:53 INSTALL.md drwxr-xr-x 3 cfd users 18 Feb 14 14:53 lib -rw-r--r-- 1 cfd users 2146 Feb 14 14:53 LICENSE -rw-r--r-- 1 cfd users 1338 Feb 14 14:53 LICENSE.BSL -rw-r--r-- 1 cfd users 340 Feb 14 14:53 LICENSE.COMMERCIAL -rw-r--r-- 1 cfd users 1168 Feb 14 14:53 LICENSE.FREE_USE -rw-r--r-- 1 cfd users 35147 Feb 14 14:53 LICENSE.GPL -rw-r--r-- 1 cfd users 7651 Feb 14 14:53 LICENSE.LGPL -rw-r--r-- 1 cfd users 1055 Feb 14 14:53 LICENSE.RFL drwxr-xr-x 3 cfd users 25 Feb 14 14:53 package_info -rw-r--r-- 1 cfd users 1764 Feb 14 14:53 README drwxr-xr-x 3 cfd users 68 Feb 14 14:53 src drwxr-xr-x 3 cfd users 46 Feb 14 14:53 test ~/OpenFOAM/ThirdParty-dev/CGAL-5.0.2 > |
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Hello Will I think I got it. on https://github.com/CGAL/cgal/releases/tag/releases%2FCGAL-5.0.2 I downloaded the "Source code" (last position on the page), while you are working with CGAL-5.0.2.tar.xz (somewhere in the middle of the page). Up to now with the makeCGAL script it did not make a difference, but the two packages are not entirely identical. Using CGAL-5.0.2.tar.xz resolves the issue. Best George |
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Ah, ok, I see it now. CGAL's cmake configuration presumably used to deal with the fact that the sources were in a different place and ultimately installed them all to the same place. We're not using that any more, though, so we no longer get that advantage. I think it's better to insist on the "CGAL-5.0.2.tar.xz" pack rather than also allow the "cgal-releases-CGAL-5.0.2.tar.gz" pack, partly because the latter requires renaming following extraction anyway, but mostly because the former is a tenth of the size. The "cgal-releases-CGAL-5.0.2.tar.gz" pack has all the documentation and examples and test data and such that we don't need. What would be nice is if the ThirdParty-dev/Allwmake just downloaded it automatically if FOAMY_HEX_MESH is true and CGAL_ARCH_PATH is set (ditto boost). The same could be done for scotch; we could stop having to bundle it. None of this is critical, though. I'll add it to the long list. No changes necessary then, for now. Closing. |
| Date Modified | Username | Field | Change |
|---|---|---|---|
| 2020-05-17 08:50 | gskillas | New Issue | |
| 2020-05-19 08:35 | will | Note Added: 0011354 | |
| 2020-05-19 08:55 | gskillas | Note Added: 0011355 | |
| 2020-05-19 08:56 | gskillas | Note Added: 0011356 | |
| 2020-05-19 10:28 | will | Note Added: 0011357 | |
| 2020-05-19 23:00 | gskillas | Note Added: 0011359 | |
| 2020-05-19 23:15 | gskillas | Note Added: 0011360 | |
| 2020-05-20 09:29 | will | Assigned To | => will |
| 2020-05-20 09:29 | will | Status | new => closed |
| 2020-05-20 09:29 | will | Resolution | open => no change required |
| 2020-05-20 09:29 | will | Note Added: 0011361 | |
| 2020-06-01 11:21 | wyldckat | Relationship added | related to 0003500 |
