0000237: multiRegionHeaterRadiation tutorials fails in parallel - OpenFOAM Issue Tracking

ID	Project	Category	View Status	Date Submitted	Last Update

0000237	OpenFOAM	Bug	public	2011-07-05 08:27	2011-07-11 10:26

Reporter	gdtech	Assigned To	~~user21~~
Priority	normal	Severity	minor	Reproducibility	always
Status	resolved	Resolution	fixed
Platform	Linux	OS	Ubuntu	OS Version	11.04

Summary	0000237: multiRegionHeaterRadiation tutorials fails in parallel
Description	Tutorial multiRegionHeaterRadiation fails when running in parallel : /---------------------------------------------------------------------------\ \| ========= \| \| \| \\ / F ield \| OpenFOAM: The Open Source CFD Toolbox \| \| \\ / O peration \| Version: 2.0.0 \| \| \\ / A nd \| Web: www.OpenFOAM.com \| \| \\/ M anipulation \| \| \---------------------------------------------------------------------------/ Build : 2.0.0-d79727c3fca7 Exec : chtMultiRegionSimpleFoam -parallel Date : Jul 05 2011 Time : 09:24:37 Host : gdtech-laptop11 PID : 4700 Case : /home/gdtech/OpenFOAM/gdtech-2.0.0/run/tutorials/heatTransfer/chtMultiRegionSimpleFoam/multiRegionHeaterRadiation nProcs : 4 Slaves : 3 ( gdtech-laptop11.4701 gdtech-laptop11.4702 gdtech-laptop11.4703 ) Pstream initialized with: floatTransfer : 0 nProcsSimpleSum : 0 commsType : nonBlocking sigFpe : Enabling floating point exception trapping (FOAM_SIGFPE). fileModificationChecking : Monitoring run-time modified files using timeStampMaster allowSystemOperations : Disallowing user-supplied system call operations // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * // Create time Create fluid mesh for region bottomAir for time = 0 Create fluid mesh for region topAir for time = 0 Create solid mesh for region heater for time = 0 Create solid mesh for region leftSolid for time = 0 Create solid mesh for region rightSolid for time = 0 * Reading fluid mesh thermophysical properties for region bottomAir Adding to thermoFluid Selecting thermodynamics package hRhoThermo<pureMixture<constTransport<specieThermo<hConstThermo<perfectGas>>>>> Adding to rhoFluid Adding to KFluid Adding to UFluid Adding to phiFluid Adding to gFluid Adding to turbulence Selecting turbulence model type laminar Adding to ghFluid Adding to ghfFluid Selecting radiationModel viewFactor Selecting absorptionEmissionModel constantAbsorptionEmission Selecting scatterModel constantScatter [3] #0 Foam::error::printStack(Foam::Ostream&)[1] #0 Foam::error::printStack(Foam::Ostream&)[0] #0 Foam::error::printStack(Foam::Ostream&)[2] #0 Foam::error::printStack(Foam::Ostream&) in "/opt/openfoam200/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [0] #1 Foam::sigSegv::sigHandler(int) in "/opt/openfoam200/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [2] #1 Foam::sigSegv::sigHandler(int) in "/opt/openfoam200/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [1] #1 Foam::sigSegv::sigHandler(int) in "/opt/openfoam200/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [3] #1 Foam::sigSegv::sigHandler(int) in "/opt/openfoam200/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [3] #2 in "/opt/openfoam200/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [1] #2 in "/opt/openfoam200/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [2] #2 in "/opt/openfoam200/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" [0] #2 in "/lib/x86_64-linux-gnu/libc.so.6" [3] #3 Foam::singleCellFvMesh::agglomerateMesh(Foam::fvMesh const&, Foam::List<Foam::List<int> > const&) in "/lib/x86_64-linux-gnu/libc.so.6" [0] #3 Foam::singleCellFvMesh::agglomerateMesh(Foam::fvMesh const&, Foam::List<Foam::List<int> > const&) in "/lib/x86_64-linux-gnu/libc.so.6" [2] #3 Foam::singleCellFvMesh::agglomerateMesh(Foam::fvMesh const&, Foam::List<Foam::List<int> > const&) in "/lib/x86_64-linux-gnu/libc.so.6" [1] #3 Foam::singleCellFvMesh::agglomerateMesh(Foam::fvMesh const&, Foam::List<Foam::List<int> > const&) in "/opt/openfoam200/platforms/linux64GccDPOpt/lib/libfiniteVolume.so" [0] #4 Foam::singleCellFvMesh::singleCellFvMesh(Foam::IOobject const&, Foam::fvMesh const&, Foam::List<Foam::List<int> > const&) in "/opt/openfoam200/platforms/linux64GccDPOpt/lib/libfiniteVolume.so" [1] #4 Foam::singleCellFvMesh::singleCellFvMesh(Foam::IOobject const&, Foam::fvMesh const&, Foam::List<Foam::List<int> > const&) in "/opt/openfoam200/platforms/linux64GccDPOpt/lib/libfiniteVolume.so" [3] #4 Foam::singleCellFvMesh::singleCellFvMesh(Foam::IOobject const&, Foam::fvMesh const&, Foam::List<Foam::List<int> > const&) in "/opt/openfoam200/platforms/linux64GccDPOpt/lib/libfiniteVolume.so" [2] #4 Foam::singleCellFvMesh::singleCellFvMesh(Foam::IOobject const&, Foam::fvMesh const&, Foam::List<Foam::List<int> > const&) in "/opt/openfoam200/platforms/linux64GccDPOpt/lib/libfiniteVolume.so" [1] #5 Foam::radiation::viewFactor::viewFactor(Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh> const&) in "/opt/openfoam200/platforms/linux64GccDPOpt/lib/libfiniteVolume.so" [0] #5 Foam::radiation::viewFactor::viewFactor(Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh> const&) in "/opt/openfoam200/platforms/linux64GccDPOpt/lib/libfiniteVolume.so" [3] #5 Foam::radiation::viewFactor::viewFactor(Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh> const&) in "/opt/openfoam200/platforms/linux64GccDPOpt/lib/libfiniteVolume.so" [2] #5 Foam::radiation::viewFactor::viewFactor(Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh> const&) in "/opt/openfoam200/platforms/linux64GccDPOpt/lib/libradiationModels.so" [0] #6 Foam::radiation::radiationModel::adddictionaryConstructorToTable<Foam::radiation::viewFactor>::New(Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh> const&) in "/opt/openfoam200/platforms/linux64GccDPOpt/lib/libradiationModels.so" [3] #6 Foam::radiation::radiationModel::adddictionaryConstructorToTable<Foam::radiation::viewFactor>::New(Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh> const&) in "/opt/openfoam200/platforms/linux64GccDPOpt/lib/libradiationModels.so" [2] #6 Foam::radiation::radiationModel::adddictionaryConstructorToTable<Foam::radiation::viewFactor>::New(Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh> const&) in "/opt/openfoam200/platforms/linux64GccDPOpt/lib/libradiationModels.so" [1] #6 Foam::radiation::radiationModel::adddictionaryConstructorToTable<Foam::radiation::viewFactor>::New(Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh> const&) in "/opt/openfoam200/platforms/linux64GccDPOpt/lib/libradiationModels.so" [0] #7 Foam::radiation::radiationModel::New(Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh> const&) in "/opt/openfoam200/platforms/linux64GccDPOpt/lib/libradiationModels.so" [3] #7 Foam::radiation::radiationModel::New(Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh> const&) in "/opt/openfoam200/platforms/linux64GccDPOpt/lib/libradiationModels.so" [1] #7 Foam::radiation::radiationModel::New(Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh> const&) in "/opt/openfoam200/platforms/linux64GccDPOpt/lib/libradiationModels.so" [0] #8 in "/opt/openfoam200/platforms/linux64GccDPOpt/lib/libradiationModels.so" [2] #7 Foam::radiation::radiationModel::New(Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh> const&) in "/opt/openfoam200/platforms/linux64GccDPOpt/lib/libradiationModels.so" [1] #8 in "/opt/openfoam200/platforms/linux64GccDPOpt/lib/libradiationModels.so" [3] #8 in "/opt/openfoam200/platforms/linux64GccDPOpt/lib/libradiationModels.so" [2] #8 [0] in "/opt/openfoam200/platforms/linux64GccDPOpt/bin/chtMultiRegionSimpleFoam" [0] #9 __libc_start_main[1] in "/opt/openfoam200/platforms/linux64GccDPOpt/bin/chtMultiRegionSimpleFoam" [1] #9 __libc_start_main[3] in "/opt/openfoam200/platforms/linux64GccDPOpt/bin/chtMultiRegionSimpleFoam" [3] #9 __libc_start_main[2] in "/opt/openfoam200/platforms/linux64GccDPOpt/bin/chtMultiRegionSimpleFoam" [2] #9 __libc_start_main in "/lib/x86_64-linux-gnu/libc.so.6" [0] #10 in "/lib/x86_64-linux-gnu/libc.so.6" [2] #10 in "/lib/x86_64-linux-gnu/libc.so.6" [1] #10 in "/lib/x86_64-linux-gnu/libc.so.6" [3] #10 [1] in "/opt/openfoam200/platforms/linux64GccDPOpt/bin/chtMultiRegionSimpleFoam" [gdtech-laptop11:04701] * Process received signal * [gdtech-laptop11:04701] Signal: Segmentation fault (11) [gdtech-laptop11:04701] Signal code: (-6) [gdtech-laptop11:04701] Failing at address: 0x3e80000125d [gdtech-laptop11:04701] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x33d80) [0x7f71d7c27d80] [gdtech-laptop11:04701] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35) [0x7f71d7c27d05] [gdtech-laptop11:04701] [ 2] /lib/x86_64-linux-gnu/libc.so.6(+0x33d80) [0x7f71d7c27d80] [gdtech-laptop11:04701] [ 3] /opt/openfoam200/platforms/linux64GccDPOpt/lib/libfiniteVolume.so(_ZN4Foam16singleCellFvMesh15agglomerateMeshERKNS_6fvMeshERKNS_4ListINS4_IiEEEE+0x100) [0x7f71dab80830] [gdtech-laptop11:04701] [ 4] /opt/openfoam200/platforms/linux64GccDPOpt/lib/libfiniteVolume.so(_ZN4Foam16singleCellFvMeshC1ERKNS_8IOobjectERKNS_6fvMeshERKNS_4ListINS7_IiEEEE+0x7fc) [0x7f71dab83a3c] [gdtech-laptop11:04701] [ 5] /opt/openfoam200/platforms/linux64GccDPOpt/lib/libradiationModels.so(_ZN4Foam9radiation10viewFactorC1ERKNS_14GeometricFieldIdNS_12fvPatchFieldENS_7volMeshEEE+0x136) [0x7f71d92dac66] [gdtech-laptop11:04701] [ 6] /opt/openfoam200/platforms/linux64GccDPOpt/lib/libradiationModels.so(_ZN4Foam9radiation14radiationModel31adddictionaryConstructorToTableINS0_10viewFactorEE3NewERKNS_14GeometricFieldIdNS_12fvPatchFieldENS_7volMeshEEE+0x31) [0x7f71d92e9a21] [gdtech-laptop11:04701] [ 7] /opt/openfoam200/platforms/linux64GccDPOpt/lib/libradiationModels.so(_ZN4Foam9radiation14radiationModel3NewERKNS_14GeometricFieldIdNS_12fvPatchFieldENS_7volMeshEEE+0x6b6) [0x7f71d92a77c6] [gdtech-laptop11:04701] [ 8] chtMultiRegionSimpleFoam() [0x423a16] [gdtech-laptop11:04701] [ 9] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xff) [0x7f71d7c12eff] [gdtech-laptop11:04701] [10] chtMultiRegionSimpleFoam() [0x41f4d9] [gdtech-laptop11:04701] * End of error message * [2] in "/opt/openfoam200/platforms/linux64GccDPOpt/bin/chtMultiRegionSimpleFoam" [gdtech-laptop11:04702] * Process received signal * [gdtech-laptop11:04702] Signal: Segmentation fault (11) [gdtech-laptop11:04702] Signal code: (-6) [gdtech-laptop11:04702] Failing at address: 0x3e80000125e [gdtech-laptop11:04702] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x33d80) [0x7f44a2e95d80] [gdtech-laptop11:04702] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35) [0x7f44a2e95d05] [gdtech-laptop11:04702] [ 2] /lib/x86_64-linux-gnu/libc.so.6(+0x33d80) [0x7f44a2e95d80] [gdtech-laptop11:04702] [ 3] /opt/openfoam200/platforms/linux64GccDPOpt/lib/libfiniteVolume.so(_ZN4Foam16singleCellFvMesh15agglomerateMeshERKNS_6fvMeshERKNS_4ListINS4_IiEEEE+0x100) [0x7f44a5dee830] [gdtech-laptop11:04702] [ 4] /opt/openfoam200/platforms/linux64GccDPOpt/lib/libfiniteVolume.so(_ZN4Foam16singleCellFvMeshC1ERKNS_8IOobjectERKNS_6fvMeshERKNS_4ListINS7_IiEEEE+0x7fc) [0x7f44a5df1a3c] [gdtech-laptop11:04702] [ 5] /opt/openfoam200/platforms/linux64GccDPOpt/lib/libradiationModels.so(_ZN4Foam9radiation10viewFactorC1ERKNS_14GeometricFieldIdNS_12fvPatchFieldENS_7volMeshEEE+0x136) [0x7f44a4548c66] [gdtech-laptop11:04702] [ 6] /opt/openfoam200/platforms/linux64GccDPOpt/lib/libradiationModels.so(_ZN4Foam9radiation14radiationModel31adddictionaryConstructorToTableINS0_10viewFactorEE3NewERKNS_14GeometricFieldIdNS_12fvPatchFieldENS_7volMeshEEE+0x31) [0x7f44a4557a21] [gdtech-laptop11:04702] [ 7] /opt/openfoam200/platforms/linux64GccDPOpt/lib/libradiationModels.so(_ZN4Foam9radiation14radiationModel3NewERKNS_14GeometricFieldIdNS_12fvPatchFieldENS_7volMeshEEE+0x6b6) [0x7f44a45157c6] [gdtech-laptop11:04702] [ 8] chtMultiRegionSimpleFoam() [0x423a16] [gdtech-laptop11:04702] [ 9] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xff) [0x7f44a2e80eff] [gdtech-laptop11:04702] [10] chtMultiRegionSimpleFoam() [0x41f4d9] [gdtech-laptop11:04702] * End of error message * -------------------------------------------------------------------------- mpirun noticed that process rank 1 with PID 4701 on node gdtech-laptop11 exited on signal 11 (Segmentation fault). -------------------------------------------------------------------------- [0] in "/opt/openfoam200/platforms/linux64GccDPOpt/bin/chtMultiRegionSimpleFoam" [gdtech-laptop11:04700] * Process received signal * [gdtech-laptop11:04700] Signal: Segmentation fault (11) [gdtech-laptop11:04700] Signal code: (-6) [gdtech-laptop11:04700] Failing at address: 0x3e80000125c [gdtech-laptop11:04700] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x33d80) [0x7fadf8a06d80] [gdtech-laptop11:04700] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35) [0x7fadf8a06d05] [gdtech-laptop11:04700] [ 2] /lib/x86_64-linux-gnu/libc.so.6(+0x33d80) [0x7fadf8a06d80] [gdtech-laptop11:04700] [ 3] /opt/openfoam200/platforms/linux64GccDPOpt/lib/libfiniteVolume.so(_ZN4Foam16singleCellFvMesh15agglomerateMeshERKNS_6fvMeshERKNS_4ListINS4_IiEEEE+0x100) [0x7fadfb95f830] [gdtech-laptop11:04700] [ 4] /opt/openfoam200/platforms/linux64GccDPOpt/lib/libfiniteVolume.so(_ZN4Foam16singleCellFvMeshC1ERKNS_8IOobjectERKNS_6fvMeshERKNS_4ListINS7_IiEEEE+0x7fc) [0x7fadfb962a3c] [gdtech-laptop11:04700] [ 5] /opt/openfoam200/platforms/linux64GccDPOpt/lib/libradiationModels.so(_ZN4Foam9radiation10viewFactorC1ERKNS_14GeometricFieldIdNS_12fvPatchFieldENS_7volMeshEEE+0x136) [0x7fadfa0b9c66] [gdtech-laptop11:04700] [ 6] /opt/openfoam200/platforms/linux64GccDPOpt/lib/libradiationModels.so(_ZN4Foam9radiation14radiationModel31adddictionaryConstructorToTableINS0_10viewFactorEE3NewERKNS_14GeometricFieldIdNS_12fvPatchFieldENS_7volMeshEEE+0x31) [0x7fadfa0c8a21] [gdtech-laptop11:04700] [ 7] /opt/openfoam200/platforms/linux64GccDPOpt/lib/libradiationModels.so(_ZN4Foam9radiation14radiationModel3NewERKNS_14GeometricFieldIdNS_12fvPatchFieldENS_7volMeshEEE+0x6b6) [0x7fadfa0867c6] [gdtech-laptop11:04700] [ 8] chtMultiRegionSimpleFoam() [0x423a16] [gdtech-laptop11:04700] [ 9] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xff) [0x7fadf89f1eff] [gdtech-laptop11:04700] [10] chtMultiRegionSimpleFoam() [0x41f4d9] [gdtech-laptop11:04700] * End of error message * [3] in "/opt/openfoam200/platforms/linux64GccDPOpt/bin/chtMultiRegionSimpleFoam" [gdtech-laptop11:04703] * Process received signal * [gdtech-laptop11:04703] Signal: Segmentation fault (11) [gdtech-laptop11:04703] Signal code: (-6) [gdtech-laptop11:04703] Failing at address: 0x3e80000125f [gdtech-laptop11:04703] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x33d80) [0x7f91d22c5d80] [gdtech-laptop11:04703] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35) [0x7f91d22c5d05] [gdtech-laptop11:04703] [ 2] /lib/x86_64-linux-gnu/libc.so.6(+0x33d80) [0x7f91d22c5d80] [gdtech-laptop11:04703] [ 3] /opt/openfoam200/platforms/linux64GccDPOpt/lib/libfiniteVolume.so(_ZN4Foam16singleCellFvMesh15agglomerateMeshERKNS_6fvMeshERKNS_4ListINS4_IiEEEE+0x100) [0x7f91d521e830] [gdtech-laptop11:04703] [ 4] /opt/openfoam200/platforms/linux64GccDPOpt/lib/libfiniteVolume.so(_ZN4Foam16singleCellFvMeshC1ERKNS_8IOobjectERKNS_6fvMeshERKNS_4ListINS7_IiEEEE+0x7fc) [0x7f91d5221a3c] [gdtech-laptop11:04703] [ 5] /opt/openfoam200/platforms/linux64GccDPOpt/lib/libradiationModels.so(_ZN4Foam9radiation10viewFactorC1ERKNS_14GeometricFieldIdNS_12fvPatchFieldENS_7volMeshEEE+0x136) [0x7f91d3978c66] [gdtech-laptop11:04703] [ 6] /opt/openfoam200/platforms/linux64GccDPOpt/lib/libradiationModels.so(_ZN4Foam9radiation14radiationModel31adddictionaryConstructorToTableINS0_10viewFactorEE3NewERKNS_14GeometricFieldIdNS_12fvPatchFieldENS_7volMeshEEE+0x31) [0x7f91d3987a21] [gdtech-laptop11:04703] [ 7] /opt/openfoam200/platforms/linux64GccDPOpt/lib/libradiationModels.so(_ZN4Foam9radiation14radiationModel3NewERKNS_14GeometricFieldIdNS_12fvPatchFieldENS_7volMeshEEE+0x6b6) [0x7f91d39457c6] [gdtech-laptop11:04703] [ 8] chtMultiRegionSimpleFoam() [0x423a16] [gdtech-laptop11:04703] [ 9] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xff) [0x7f91d22b0eff] [gdtech-laptop11:04703] [10] chtMultiRegionSimpleFoam() [0x41f4d9] [gdtech-laptop11:04703] * End of error message ***
Steps To Reproduce	edit Allrun Comment line : runApplication `getApplication` Uncomment blocks : decompose, run and reconstruct ./Allrun
Tags	No tags attached.

Date Modified	Username	Field	Change
2011-07-05 08:27	gdtech	New Issue
2011-07-11 10:25	~~user21~~	Note Added: 0000538
2011-07-11 10:25	~~user21~~	Assigned To	=> user21
2011-07-11 10:25	~~user21~~	Status	new => assigned
2011-07-11 10:26	~~user21~~	Status	assigned => resolved
2011-07-11 10:26	~~user21~~	Fixed in Version	=> 2.0.x
2011-07-11 10:26	~~user21~~	Resolution	open => fixed