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IDProjectCategoryView StatusLast Update
0002959OpenFOAMBugpublic2018-05-26 09:45
ReporterJaya Assigned Tohenry  
PriorityhighSeveritymajorReproducibilityalways
Status closedResolutionno change required 
PlatformGNU/LinuxOSUbuntuOS Version12.04
Summary0002959: The solver of laminarSMOKE can not run in parallel.
DescriptionThe version of OpenFOAM is 2.1.1.
I want to use the solver of laminarSMOKE to do some calculation.
However, the laminarSMOKE can run well in single core. But when is set up in paralled it cannot work.
In addition, I have tried to perform parallel calculations using other solvers, such as icoFoam or interFoam, the parallel calculation is OK.
====================================================================================
  zhaowh@ubuntu:~/OpenFOAM/zhaowh-2.1.1/run/Tutorial-1$ mpirun -np 4 laminarSMOKE -parallel
/*---------------------------------------------------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: 2.1.1 |
| \\ / A nd | Web: www.OpenFOAM.org |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
Build : 2.1.1-221db2718bbb
Exec : laminarSMOKE -parallel
Date : May 26 2018
Time : 16:22:13
Host : "ubuntu"
PID : 59086
Case : /home/zhaowh/OpenFOAM/zhaowh-2.1.1/run/Tutorial-1
nProcs : 4
Slaves :
3
(
"ubuntu.59087"
"ubuntu.59088"
"ubuntu.59089"
)

Pstream initialized with:
    floatTransfer : 0
    nProcsSimpleSum : 0
    commsType : nonBlocking
sigFpe : Enabling floating point exception trapping (FOAM_SIGFPE).
fileModificationChecking : Monitoring run-time modified files using timeStampMaster
allowSystemOperations : Disallowing user-supplied system call operations

// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
Create time

Create mesh for time = 0


Reading g
Reading field U

Reading field p

Reading field T

Creating cTot

Creating enthalpy

Creating psi

Creating mu

Creating lambda

Creating cp

Creating MW

Creating Qrad

Creating MF

Creating elementMassN

Creating elementMassC

Creating elementMassH

Creating elementMassO

Creating sumCpSpecies

Creating sumCorrections

Reading Solver options

Name: [not assigned]
Author: [not assigned]
Place: [not assigned]
Date: Fri May 11 16:22:44 2018

Minimum temperature: 300 K
Maximum temperature: 3600 K
--------------------------------------------------------------------------
                       KINETIC SCHEME SUMMARY
--------------------------------------------------------------------------
  Total number of species = 53
  Total number of reactions = 325
    Number of irreversible reactions = 16
    Number of equilibrium reactions = 309
    Number of conventional reactions = 284
    Number of third body reactions (total) = 41
    Number of third body reactions = 12
    Number of Fall-Off reactions = 29
    Number of C.A.B. reactions = 0
    Number of Landau-Teller reactions = 0
    Number of Janev-Langer reactions = 0
    Number of Power-Series reactions = 0
    Number of Chebishev-Pol. reactions = 0
    Number of Log-Pressure reactions = 0
    Number of Global reactions = 0
    Number of Bimolecular Coll. reactions = 0
--------------------------------------------------------------------------

Name: [not assigned]
Author: [not assigned]
Place: [not assigned]
Date: Fri May 11 16:22:44 2018

Reading Reacting Gas Mixture...

Name: [not assigned]
Author: [not assigned]
Place: [not assigned]
Date: Fri May 11 16:22:44 2018

Minimum temperature: 300 K
Maximum temperature: 3600 K
--------------------------------------------------------------------------
                       KINETIC SCHEME SUMMARY
--------------------------------------------------------------------------
  Total number of species = 53
  Total number of reactions = 325
    Number of irreversible reactions = 16
    Number of equilibrium reactions = 309
    Number of conventional reactions = 284
    Number of third body reactions (total) = 41
    Number of third body reactions = 12
    Number of Fall-Off reactions = 29
    Number of C.A.B. reactions = 0
    Number of Landau-Teller reactions = 0
    Number of Janev-Langer reactions = 0
    Number of Power-Series reactions = 0
    Number of Chebishev-Pol. reactions = 0
    Number of Log-Pressure reactions = 0
    Number of Global reactions = 0
    Number of Bimolecular Coll. reactions = 0
--------------------------------------------------------------------------


Reading Chemical Species
Reading omega: "H2" => "H2"
Reading omega: "H" => Ydefault
Reading omega: "O" => Ydefault
Minimum temperature: 300 K
Reading omega: "O2" => "O2"
Reading omega: "OH" => Ydefault
Reading omega: "H2O" => Ydefault
Reading omega: "HO2" => Ydefault
Reading omega: "H2O2" => Ydefault
Reading omega: "C" => Ydefault
Reading omega: "CH" => Ydefault
Reading omega: "CH2" => Ydefault
Reading omega: "CH2(S)" => Ydefault
Reading omega: "CH3" => Ydefault
Reading omega: "CH4" => Ydefault
Reading omega: "CO" => Ydefault
Reading omega: "CO2" => Ydefault
Reading omega: "HCO" => Ydefault
Reading omega: "CH2O" => Ydefault
Reading omega: "CH2OH" => Ydefault
Reading omega: "CH3O" => Ydefault
Reading omega: "CH3OH" => Ydefault
Reading omega: "C2H" => Ydefault
Reading omega: "C2H2" => Ydefault
Reading omega: "C2H3" => Ydefault
Reading omega: "C2H4" => Ydefault
Reading omega: "C2H5" => Ydefault
Reading omega: "C2H6" => Ydefault
Reading omega: "HCCO" => Ydefault
Reading omega: "CH2CO" => Ydefault
Reading omega: "HCCOH" => Ydefault
Reading omega: "N" => Ydefault
Reading omega: "NH" => Ydefault
Reading omega: "NH2" => Ydefault
Maximum temperature: 3600 K
--------------------------------------------------------------------------
                       KINETIC SCHEME SUMMARY
--------------------------------------------------------------------------
  Total number of species = 53
  Total number of reactions = 325
    Number of irreversible reactions = 16
    Number of equilibrium reactions = 309
    Number of conventional reactions = 284
    Number of third body reactions (total) = 41
    Number of third body reactions = 12
    Number of Fall-Off reactions = 29
    Number of C.A.B. reactions = 0
    Number of Landau-Teller reactions = 0
    Number of Janev-Langer reactions = 0
    Number of Power-Series reactions = 0
    Number of Chebishev-Pol. reactions = 0
    Number of Log-Pressure reactions = 0
    Number of Global reactions = 0
    Number of Bimolecular Coll. reactions = 0
--------------------------------------------------------------------------

Reading omega: "NH3" => Ydefault
Reading omega: "NNH" => Ydefault
Reading omega: "NO" => Ydefault
Reading omega: "NO2" => Ydefault
Reading omega: "N2O" => Ydefault
Reading omega: "HNO" => Ydefault
Reading omega: "CN" => Ydefault
Name: [not assigned]
Reading omega: "HCN" => Ydefault
Author: [not assigned]
Place: [not assigned]
Date: Fri May 11 16:22:44 2018

Minimum temperature: 300 K
Maximum temperature: 3600 K
Reading omega: "H2CN" => Ydefault
Reading omega: "HCNN" => Ydefault
Reading omega: "HCNO" => Ydefault
Reading omega: "HOCN" => Ydefault
Reading omega: "HNCO" => Ydefault
--------------------------------------------------------------------------
                       KINETIC SCHEME SUMMARY
--------------------------------------------------------------------------
  Total number of species = 53
  Total number of reactions = 325
    Number of irreversible reactions = 16
    Number of equilibrium reactions = 309
    Number of conventional reactions = 284
    Number of third body reactions (total) = 41
    Number of third body reactions = 12
    Number of Fall-Off reactions = 29
    Number of C.A.B. reactions = 0
    Number of Landau-Teller reactions = 0
    Number of Janev-Langer reactions = 0
    Number of Power-Series reactions = 0
    Number of Chebishev-Pol. reactions = 0
    Number of Log-Pressure reactions = 0
    Number of Global reactions = 0
    Number of Bimolecular Coll. reactions = 0
--------------------------------------------------------------------------

Reading omega: "NCO" => Ydefault
[2] #0 Foam::error::printStack(Foam::Ostream&)Reading omega: "N2" => "N2"
Reading omega: "AR" => "AR"
Reading omega: "C3H7" => Ydefault
Reading omega: "C3H8" => Ydefault
Reading omega: "CH2CHO" => Ydefault
Reading omega: "CH3CHO" => Ydefault
 * Memory Allocation...
 * Soot Allocation...
 * Mixture fraction...
Fuel stream (mass fractions):
H2 0.066637
N2 0.933363
Oxidizer stream (mass fractions):
O2 0.231442
N2 0.754902
AR 0.013656
 * Recognizing atoms...
 * Properties...
 in "/home/zhaowh/OpenFOAM/OpenFOAM-2.1.1/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[2] #1 Foam::sigSegv::sigHandler(int)[3] #0 in Foam::error::printStack(Foam::Ostream&)"/home/zhaowh/OpenFOAM/OpenFOAM-2.1.1/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[2] #2 [1] in "/home/zhaowh/OpenFOAM/OpenFOAM-2.1.1/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[3] #1 Foam::sigSegv::sigHandler(int)#0 Foam::error::printStack(Foam::Ostream&Properties calculated with success. CPU Time: 0.02 s
u/libc.so.6"
[2] #3 * Additional fields...
Reading/calculating face flux field phi

 in "/hom in "/home/zhaowh/OpenFOAM/OpenFOAM-2.1.1/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[1] #1 Foam::sigSegv::sigHandler(int)e/zhaowh/OpenFOAM/OpenF
OAM-2.1.1/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[3] #2 [2] in "/home/zhaowh/OpenFOAM/OpenFOAM-2.1.1/platforms/linux64GccDPOpt/bin/laminarSMOKE"
[2] #4 __libc_start_main in "/home/zhaowh/OpenFOAM/OpenFOAM-2.1.1/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[1] #2 in "/lib/x86_64-linux-gnu/libc.so.6"
[3] #3 in "/lib/x86_64-linux-gnu/libc.so.6"
[2] #5 in "/lib/x86_64-linux-gnu/libc.so.6"
[1] #3


[3] in "/home/zhaowh/O[2] in "/home/zhaowh/OpenFOAM/OpenFOAM-2.1.1/platforms/linux64GccDPOpt/bin/laminarSMOKE"
[ubuntu:59088] *** Process received signal ***
[ubuntu:59088] Signal: Segmentation fault (11)
[ubuntu:59088] Signal code: (-6)
[ubuntu:59088] Failing at address: 0x3e80000e6d0
penFOAM/OpenFOAM-2.1.1/pla[ubuntu:59088] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x36570) [0x7fedfab0f570]
[ubuntu:59088] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35) [0x7fedfab0f4f5]
[ubuntu:59088] [ 2] /lib/x86_64-linux-gnu/libc.so.6(+0x36570) [0x7fedfab0f570]
[ubuntu:59088] [ 3] laminarSMOKE() [0x41fb97]
[ubuntu:59088] [ 4] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x7fedfaafa78d]
[ubuntu:59088] [ 5] laminarSMOKE() [0x44a9bd]
[ubuntu:59088] *** End of error message ***
tforms/linux64GccDPOpt/bin/laminarSMOKE"
[3] #4 __libc_start_main[1] in "/home/zhaowh/OpenFOAM/OpenFOAM-2.1.1/platforms/linux64GccDPOpt/bin/laminarSMOKE"
[1] #4 __libc_start_main in "/lib/x86_64-linux-gnu/libc.so.6"
[3] #5 in "/lib/x86_64-linux-gnu/libc.so.6"
[1] #5

[1] in "/home/zhaowh/OpenFOAM/OpenFOAM-2.1.1/platforms/linux64GccDPOpt/bin/laminarSMOKE"
[ubuntu:59087] *** Process received signal ***
[ubuntu:59087] Signal: Segmentation fault (11)
[ubuntu:59087] Signal code: (-6)
[ubuntu:59087] Failing at address: 0x3e80000e6cf
[ubuntu:59087] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x36570) [0x7f6dbc08b570]
[ubuntu:59087] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35) [0x7f6dbc08b4f5]
[ubuntu:59087] [ 2] /lib/x86_64-linux-gnu/libc.so.6(+0x36570) [0x7f6dbc08b570]
[ubuntu:59087] [ 3] laminarSMOKE() [0x41fb97]
[ubuntu:59087] [ 4] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x7f6dbc07678d]
[ubuntu:59087] [ 5] laminarSMOKE() [0x44a9bd]
[ubuntu:59087] *** End of error message ***
[3] in "/home/zhaowh/OpenFOAM/OpenFOAM-2.1.1/platforms/linux64GccDPOpt/bin/laminarSMOKE"
[ubuntu:59089] *** Process received signal ***
[ubuntu:59089] Signal: Segmentation fault (11)
[ubuntu:59089] Signal code: (-6)
[ubuntu:59089] Failing at address: 0x3e80000e6d1
[ubuntu:59089] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x36570) [0x7f732caed570]
[ubuntu:59089] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35) [0x7f732caed4f5]
[ubuntu:59089] [ 2] /lib/x86_64-linux-gnu/libc.so.6(+0x36570) [0x7f732caed570]
[ubuntu:59089] [ 3] laminarSMOKE() [0x41fb97]
[ubuntu:59089] [ 4] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x7f732cad878d]
--------------------------------------------------------------------------
mpirun noticed that process rank 1 with PID 59087 on node ubuntu exited on signal 11 (Segmentation fault).
--------------------------------------------------------------------------
zhaowh@ubuntu:~/OpenFOAM/zhaowh-2.1.1/run/Tutorial-1$
TagsNo tags attached.

Activities

henry

2018-05-26 09:45

manager   ~0009654

The laminarSMOKE solver is not part of OpenFOAM, you will need to contact the maintainers of that solver.

Issue History

Date Modified Username Field Change
2018-05-26 09:25 Jaya New Issue
2018-05-26 09:45 henry Assigned To => henry
2018-05-26 09:45 henry Status new => closed
2018-05-26 09:45 henry Resolution open => no change required
2018-05-26 09:45 henry Note Added: 0009654